RPSBLAST alignment for GI: 254780289 and conserved domain: PRK05657

>gnl|CDD|180185 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated. Length = 325
 Score =  220 bits (564), Expect = 6e-58
 Identities = 96/251 (38%), Positives = 158/251 (62%), Gaps = 5/251 (1%)

Query: 429 HIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKF 488
           +      +G+  A   ++ M+E+NLRLV+ +AK+Y NRGL  LDLI+EGN+GL++A EKF
Sbjct: 75  YFARRALRGDFAA---RQRMIESNLRLVVKIAKRYLNRGLALLDLIEEGNLGLIRAVEKF 131

Query: 489 DWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPT 548
           D   G++FSTYA WW++Q I R+I +Q+ TIR+PVH+  +++  +R AR + +K+  EP+
Sbjct: 132 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPVHVVKELNVYLRAARELEHKLDHEPS 191

Query: 549 PEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQAN 608
            EEIA+ L  PV+ V ++L + +   SL+TP+G +    L D + D+    P +   Q +
Sbjct: 192 AEEIAELLDKPVDDVSRMLALNERITSLDTPLGGDPEKSLLDILADEQENGP-EDTTQDD 250

Query: 609 LRETTTRV-LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL 667
             + +    L  L  ++  VL  RFG+      TLE+V ++  +TRER+RQI+ +A+R+L
Sbjct: 251 DMKQSIVKWLFELNDKQREVLARRFGLLGYEAATLEDVAREIGLTRERVRQIQVEALRRL 310

Query: 668 KHPSRSKKLRS 678
           +   +++ L  
Sbjct: 311 REILQTQGLSI 321