RPSBLAST alignment for GI: 254780289 and conserved domain: PRK05658

>gnl|CDD|180186 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated. Length = 619
 Score =  931 bits (2410), Expect = 0.0
 Identities = 345/667 (51%), Positives = 435/667 (65%), Gaps = 53/667 (7%)

Query: 19  DDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSSEQMEDTVAMLSNMGINVV 78
            DS + D      KK+IK  ++RGY+T  ELN  LP D V SEQ+ED +AML++MGI VV
Sbjct: 1   GDSPMLDNPQSQLKKLIKRGKERGYLTYAELNDHLPEDIVDSEQIEDIIAMLNDMGIQVV 60

Query: 79  ----DGDDLEDEEGSEDSLDLASSASNSSVFLQKRKDSADRSTDDPVRMYLREMGSIELL 134
               D DDL   E   D+     +   ++  L   +    R TDDPVRMYLREMG++ELL
Sbjct: 61  EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGR-TDDPVRMYLREMGTVELL 119

Query: 135 SREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIIDLEACIGPE 194
           +REGEI IAKRIEAG  +M+A+LCESPLT  A++ W D L +G   LRE+ID      P 
Sbjct: 120 TREGEIEIAKRIEAGENIMIAALCESPLTIDAILEWYDRLENGERRLRELIDGFV--DPN 177

Query: 195 SKGGFFHGTEGHSYQKREDSSQEKERDDVQETEGDIESAAKVSKDDRSKVDSPPENAEND 254
           ++    H                                           +    + + D
Sbjct: 178 AEEDPAHVGS----------------------------------------ELEELDDDED 197

Query: 255 ERNLDEDEDDSAHTLSAMEDQLRPKVMCALDEIAEVYRELRSLQDNAVNGQKDEKSSVKC 314
           E   +E+ED++  +L+A E +L  KV+     +A+ Y++LR  Q+  V G+       K 
Sbjct: 198 E---EEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGR--LAQHKKY 252

Query: 315 KVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERH 374
             L+EKL + + SL L   +ID LVEQL DI+KR+   E ELLRL +   + R  FL+  
Sbjct: 253 AKLREKLKEELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLF 312

Query: 375 QGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMV 434
           QG ELD  W+          W  F+    D I K++ E+++I  ETG++I E + I   +
Sbjct: 313 QGNELDITWLEKE-IASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTIEELKEINRQI 371

Query: 435 RKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGY 494
            KGE +A  AKKEMVEANLRLVIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GY
Sbjct: 372 SKGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 431

Query: 495 KFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAK 554
           KFSTYA WW++QAITRSIADQ+ TIRIPVHM + I+K+ R +R+M  +I REPTPEE+A+
Sbjct: 432 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELAE 491

Query: 555 KLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTT 614
           +L MP + VRKVLKI KEPISLETPIGD++ SHLGDFIEDKNA  P+D+AIQ +LRE TT
Sbjct: 492 RLGMPEDKVRKVLKIAKEPISLETPIGDDEDSHLGDFIEDKNAELPIDAAIQESLREATT 551

Query: 615 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSK 674
            VLASLTPRE +VLRMRFGI MNTDHTLEEVGKQF VTRERIRQIEAKA+RKL+HPSRS+
Sbjct: 552 DVLASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSR 611

Query: 675 KLRSFLD 681
           KLRSFLD
Sbjct: 612 KLRSFLD 618