HHsearch alignment for GI: 254780290 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=92.12  E-value=0.036  Score=33.50  Aligned_cols=97  Identities=25%  Similarity=0.328  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCC----CCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf             2222222222221134444432222212222---22221112232211111----12233222--222222111122222
Q gi|254780290|r  139 QTANLRSGQTVLIHGGSSGIGTTAIQLASYF---GATVYTTAKSEEKCLAC----LKLGAKHA--INYLKEDFLEILQKE  209 (332)
Q Consensus       139 ~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~---G~~vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~i~~~  209 (332)
T Consensus       150 ~~L~p~pge~VlD~--cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~----~~  223 (355)
T COG0144         150 LVLDPKPGERVLDL--CAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA----EL  223 (355)
T ss_pred             HHCCCCCCCEEEEC--CCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CC
T ss_conf             97199997968880--7999769999999668998769974498789999999999719983489951330143----11


Q ss_pred             CCCC-CCCCCC-C--CCCCCCC--------------------------CCCCCCCCCCCCCE
Q ss_conf             2222-111222-2--1111112--------------------------22221122345304
Q gi|254780290|r  210 TQGR-GIDIIL-D--MVGAEYL--------------------------NQHLTLLSKEGKLI  241 (332)
Q Consensus       210 t~g~-g~Divi-d--~~G~~~~--------------------------~~~~~~l~~~G~iv  241 (332)
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV  285 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV  285 (355)
T ss_pred             CCCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             34557778599879998771133581232038999999999999999999998448798899