HHsearch alignment for GI: 254780290 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.85 E-value=0.023 Score=34.72 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 111222222222222113444443222221222222-221112232211111-122332222222221111222222222
Q gi|254780290|r 136 NLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGA-TVYTTAKSEEKCLAC-LKLGAKHAINYLKEDFLEILQKETQGR 213 (332)
Q Consensus 136 ~l~~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~G~-~vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~i~~~t~g~ 213 (332)
T Consensus 9 ~l~~~~~~~~~k~vlIlG-aGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~-~~~~~~~~~~------~~ 80 (155)
T cd01065 9 ALEEAGIELKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-AIAYLDLEEL------LA 80 (155)
T ss_pred HHHHCCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEECCHHHH------HC
T ss_conf 999729985799999986-758999999999971998228860899999999998501366-4010453443------15
Q ss_pred CCCCCCCCCCC
Q ss_conf 11122221111
Q gi|254780290|r 214 GIDIILDMVGA 224 (332)
Q Consensus 214 g~Divid~~G~ 224 (332)
T Consensus 81 ~~dliIN~tp~ 91 (155)
T cd01065 81 EADLIINTTPV 91 (155)
T ss_pred CCCEEEECCCC
T ss_conf 68879876778