HHsearch alignment for GI: 254780290 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=92.81 E-value=0.023 Score=34.79 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222113444443222221222-2222211122322111111223322222222211112222222221112222111111
Q gi|254780290|r 148 TVLIHGGSSGIGTTAIQLASY-FGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEY 226 (332)
Q Consensus 148 ~vlV~ga~g~vG~~a~qla~~-~G~~vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~Divid~~G~~~ 226 (332)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~--~~~~DVvIDFS~p~~ 77 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGEL--AGPLGVPVTDDLEEV--LADADVLIDFTTPEA 77 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC--CCCCCCEECCCHHHH--CCCCCEEEEECCHHH
T ss_conf 8999889887899999999858996899999438961225431001--467871112447775--157888999068789
Q ss_pred CCCCCCCCCCCCCCEEEEECCC
Q ss_conf 2222211223453047983378
Q gi|254780290|r 227 LNQHLTLLSKEGKLIIISFLGG 248 (332)
Q Consensus 227 ~~~~~~~l~~~G~iv~~G~~~~ 248 (332)
T Consensus 78 ~~~~~~~~~~~~~~~ViGTTG~ 99 (122)
T pfam01113 78 TLENLELALKHGKPLVIGTTGF 99 (122)
T ss_pred HHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999996799889989999