RPSBLAST alignment for GI: 254780290 and conserved domain: cd05188
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271
Score = 185 bits (472), Expect = 1e-47
Identities = 95/269 (35%), Positives = 136/269 (50%), Gaps = 27/269 (10%)
Query: 35 EILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCAL 94
E+L++VEA G+ D+ R+G YPPP ILG E AG +V++G T +GD V L
Sbjct: 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60
Query: 95 VNG-----------------------GGYAEYCLSHQGHTLPIPKGYNAIQAASLPESFF 131
N GG+AEY + + +P+P G + +AA LPE
Sbjct: 61 PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120
Query: 132 TVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGA 191
T + L + L+ G TVL+ G G+G A QLA GA V T +S+EK +LGA
Sbjct: 121 TAYHALRRAGVLKPGDTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA 179
Query: 192 KHAINYLKEDFLEILQKETQGRGIDIILDMVG-AEYLNQHLTLLSKEGKLIIISFLGGNI 250
H I+Y +ED E L + T G G D+++D VG E L Q L LL G+++++ G
Sbjct: 180 DHVIDYKEEDLEEEL-RLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGP 238
Query: 251 ATEINLNPIISKRITITGSTLRRRTDIAK 279
+ L ++ K +TI GST R D +
Sbjct: 239 PLDD-LRRLLFKELTIIGSTGGTREDFEE 266