RPSBLAST alignment for GI: 254780290 and conserved domain: cd05278
>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347
Score = 56.9 bits (138), Expect = 7e-09
Identities = 80/366 (21%), Positives = 136/366 (37%), Gaps = 59/366 (16%)
Query: 7 MRHVAMSGYGKSNVMFLAESPIPQPQKE-EILIKVEAIGVNRPDVMQRKGLYPPPKNANP 65
M+ + G GK + L E P P+ Q + +++V A + D+ +G P K+
Sbjct: 1 MKALVYLGPGK---IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKH-GM 56
Query: 66 ILGLEVAGKIVDLGENTTHWNIGDEV----------------------------CALVNG 97
ILG E G++V++G + GD V L N
Sbjct: 57 ILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNR 116
Query: 98 --GGYAEYCL--SHQGHTLPIPKGYNAIQAAS----LPESFFTVWANLFQTANLRSGQTV 149
GG AEY + IP G A LP F + A ++ G TV
Sbjct: 117 IDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-----ELAGIKPGSTV 171
Query: 150 LIHGGSSGIGTTAIQLASYFGAT-VYTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQK 208
+ G +G A+ A GA + + E+ + GA IN D +E + +
Sbjct: 172 AVIGAGP-VGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILE 230
Query: 209 ETQGRGIDIILDMVG-AEYLNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITIT 267
T GRG+D +++ VG E Q + ++ G + + G L K +T
Sbjct: 231 LTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPD-PLPLLGEWFGKNLTFK 289
Query: 268 GSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHTVLPLGKVAMAHDIME-KSEHIG 326
+ R + + L L ++ + + H PL + A+ + + K +
Sbjct: 290 TGLVPVRARMPE-----LLDLIEEGKIDPSKL--ITH-RFPLDDILKAYRLFDNKPDGCI 341
Query: 327 KIILLP 332
K+++ P
Sbjct: 342 KVVIRP 347