RPSBLAST alignment for GI: 254780290 and conserved domain: cd08272
>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326
Score = 218 bits (558), Expect = 1e-57
Identities = 109/340 (32%), Positives = 161/340 (47%), Gaps = 32/340 (9%)
Query: 7 MRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPI 66
M+ + + +G V L E P PQP ++L++V A GVN D R+G I
Sbjct: 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAI 60
Query: 67 LGLEVAGKIVDLGENTTHWNIGDEVCALVNG-----GGYAEYCLSHQGHTLPIPKGYNAI 121
LG +VAG + +GE T + +GDEV G G AEY + P +
Sbjct: 61 LGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMR 120
Query: 122 QAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEE 181
+AA+LP T W L A +++GQTVLIHGG+ G+G A+QLA GA VY TA SE+
Sbjct: 121 EAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASSEK 180
Query: 182 KCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLI 241
A LGA I Y +E +E + + T GRG D++ D VG E L+ ++ G+++
Sbjct: 181 AAFAR-SLGADPIIYY-RETVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVV 238
Query: 242 IISFLGGNIATEINLNPIISKRITI----------TGSTLRRRTDIAKQSIRDSLQLKIW 291
I LGG +L P+ + T TG +I +++ R
Sbjct: 239 SI--LGG---ATHDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAAR-------- 285
Query: 292 PLLNSHVIAPVIH-TVLPLGKVAMAHDIMEKSEHIGKIIL 330
L+ + P++ PL + A AH +E GKI++
Sbjct: 286 -LVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVI 324