BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780290|ref|YP_003064703.1| quinone oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
         (332 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 332

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/332 (100%), Positives = 332/332 (100%)

Query: 1   MPICKKMRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPP 60
           MPICKKMRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPP
Sbjct: 1   MPICKKMRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPP 60

Query: 61  KNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKGYNA 120
           KNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKGYNA
Sbjct: 61  KNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKGYNA 120

Query: 121 IQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSE 180
           IQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSE
Sbjct: 121 IQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSE 180

Query: 181 EKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKL 240
           EKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKL
Sbjct: 181 EKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKL 240

Query: 241 IIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIA 300
           IIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIA
Sbjct: 241 IIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIA 300

Query: 301 PVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332
           PVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP
Sbjct: 301 PVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332


>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score = 25.0 bits (53), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 295 NSHVIAPVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332
           N ++  PV+   LP+ +       MEK+  I   I+LP
Sbjct: 78  NVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLP 115


>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 243

 Score = 25.0 bits (53), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 12  MSGYGKSNVMFLAESPIPQPQKEEIL 37
           +S  GK  V+ +A  PI  PQK+EI 
Sbjct: 115 VSASGKYPVLDMASVPIQIPQKDEIF 140


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 23.1 bits (48), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 37  LIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVN 96
           ++  E +G+ + ++ Q       P +    LG++ +  I +    T  W        + +
Sbjct: 248 MVTAEELGITQKNINQVSKDTTNP-DVQRFLGIDKSSNIGEALGLTKDWTYR----IIRH 302

Query: 97  GGGYAEYCLSHQGHT--LPIPKGYNAIQA 123
            G Y E    + G+   L IP+GYNA+ +
Sbjct: 303 MGNYGEMFDRNLGNQSELKIPRGYNALWS 331


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 22.7 bits (47), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 12  MSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPI 66
           MSG  KS++ ++  S I + QK+   I+V   G+    V   K     P  +  I
Sbjct: 439 MSGGLKSSMGYVGASNIEEFQKKANFIRVSVAGLRESHVHDVKITRESPNYSETI 493


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,040
Number of Sequences: 1233
Number of extensions: 9255
Number of successful extensions: 26
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 9
length of query: 332
length of database: 328,796
effective HSP length: 74
effective length of query: 258
effective length of database: 237,554
effective search space: 61288932
effective search space used: 61288932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)