HHsearch alignment of GI: 254780291 and MMDB domain: 2q8u_A_1-281
>2q8u_A (A:1-281) Exonuclease, putative; TM1635, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=98.03 E-value=1e-05 Score=57.16 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=106.6
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHH---HHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 6889998861165678976051001212677888---88672---65575130245544478887667454550000036
Q gi|254780291|r 177 FVEAINSLKSSKNIILGILTGDMTQSSTTKELKR---FYNIY---SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCA 250 (475)
Q Consensus 177 ~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~e---Fr~Vw---nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA 250 (475)
.++++.+..+..+..|-++.||+++.|...+... +.... ....|++.-.|||||.......
T Consensus 49 ~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~------------- 115 (281)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAPVVVLPGNHDWKGLKLFG------------- 115 (281)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC------CHHHH-------------
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC-------------
T ss_conf 9999999999719989998987788999888999998899999841588789955887631134321-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHH
Q ss_conf 88899999999877655566654210010013444565521037775443343027335554036410367516753001
Q gi|254780291|r 251 FIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 (475)
Q Consensus 251 ~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~a 330 (475)
. .+ ....+...... .+.-.+....+...+.........
T Consensus 116 --------~---~~------~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----------- 153 (281)
T 2q8u_A 116 --------N---FV------TSISSDITFVX--------------SFEPVDVEAKRGQKVRILPFPYPD----------- 153 (281)
T ss_dssp --------H---HH------HHHCSSEEECC--------------SSSCEEEECTTSCEEEEEEECCC------------
T ss_pred --------C---CC------CCCCCCCEECC--------------CCCCEEEEECCCCEEEEEECCCCC-----------
T ss_conf --------1---00------01245510024--------------557568861048659999614676-----------
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH------HHHHHHHHHHHCCCCEEE
Q ss_conf 22221000256511343205655778878888840347957999500477200389------999999999858961799
Q gi|254780291|r 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSID------QKRMFEKFLTQSKISTIF 404 (475)
Q Consensus 331 f~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~~sSi~------~KrmFks~itk~nV~AIF 404 (475)
...............-.+|+...+..+......+++..|......... ....|...+.+++|..||
T Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vl 225 (281)
T 2q8u_A 154 --------ESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFXGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAA 225 (281)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTSSEEE
T ss_pred --------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECEECCCCCCCCCCCCCCCCCCHHHHHCCCCEEE
T ss_conf --------222223430577899999999999863565675389730122266677853247654553777523662565
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEECC--------CCCCCEEEEEECCCE
Q ss_conf 986423676524655531013897045--------646718999964885
Q gi|254780291|r 405 TTRFTSSPESYIKDSTGRPVRVYNINK--------NSKNEFILLEMTPHY 446 (475)
Q Consensus 405 ~aH~Hqshe~~lec~~GykVPvy~iGS--------vpkNrF~~lem~~~~ 446 (475)
.||.|.......+. +++|..++ -.++.|..+++....
T Consensus 226 ~GH~H~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (281)
T 2q8u_A 226 LGHIHSFREIQKQP-----LTIYPGSLIRIDFGEEADEKGAVFVELKRGE 270 (281)
T ss_dssp EESCSSCEEEEETT-----EEEECCCSSCCSGGGTTCCCEEEEEEEETTS
T ss_pred ECCCCCCCEECCCC-----CEEECCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 06666663306898-----8586489616774503899869999980898