HHsearch alignment of GI: 254780291 and MMDB domain: 2yvt_A_

>2yvt_A (A:) Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5}
Probab=98.43  E-value=7.7e-06  Score=57.94  Aligned_cols=215  Identities=9%  Similarity=0.016  Sum_probs=122.2

Q ss_pred             CEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHH---------------------------H
Q ss_conf             5155513310046314688999886116567897605100121267788888---------------------------6
Q gi|254780291|r  161 GIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFY---------------------------N  213 (475)
Q Consensus       161 ~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr---------------------------~  213 (475)
                      -|++++|.-+..+   ..+.+-...+..+.-+=++.|||++.+...+.....                           .
T Consensus         7 ri~~iSDlH~~~~---~~~~~~~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (260)
T 2yvt_A            7 KVLAIKNFKERFD---LLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFR   83 (260)
T ss_dssp             EEEEEECCTTCGG---GHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             7999972899989---9999999876649999999566689987898999999987655102331101113677899998


Q ss_pred             HH-CCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
Q ss_conf             72-655751302455444788-8766745455000003688899999999877655566654210010013444565521
Q gi|254780291|r  214 IY-SLKFPFFRGLGSQEYIGN-RPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETY  291 (475)
Q Consensus       214 Vw-nl~iPv~lGLGNHDYqNN-~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~  291 (475)
                      .. ..+.|++.=.||||+..+ ....                         ...      ..........          
T Consensus        84 ~~~~~~~~~~~~~GNhd~~~~~~~~~-------------------------~~~------~~~~~~~~~~----------  122 (260)
T 2yvt_A           84 EIGELGVKTFVVPGKNDAPLKIFLRA-------------------------AYE------AETAYPNIRV----------  122 (260)
T ss_dssp             HHHTTCSEEEEECCTTSCCHHHHHHH-------------------------HHH------TTTTCTTEEE----------
T ss_pred             HHHHCCCCEEEEECCCCHHHHHHHHH-------------------------HHH------HHCCCCCCCC----------
T ss_conf             88753985899947883255566777-------------------------642------3113453201----------


Q ss_pred             EEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             03777544334302733555403641036751675300122221000256511343205655778878888840347957
Q gi|254780291|r  292 SISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKY  371 (475)
Q Consensus       292 ~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~  371 (475)
                           ..-.+....+...++...... ..    ....               ....-.......+||++.+.+...  +.
T Consensus       123 -----~~~~~~~~~~~~~~~~~~~~~-~~----~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~--~~  175 (260)
T 2yvt_A          123 -----LHEGFAGWRGEFEVIGFGGLL-TE----HEFE---------------EDFVLKYPRWYVEYILKFVNELKP--RR  175 (260)
T ss_dssp             -----CSSEEEEETTTEEEEEECSEE-ES----SCCB---------------SSSSCEEEHHHHHHHGGGGGGSCC--CE
T ss_pred             -----CCCEEEEECCCEEEEEECCCC-CC----CCCC---------------CHHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf             -----243369953988999946767-76----5444---------------033333456789998764310145--65


Q ss_pred             EEEECCCCCCC---------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf             99950047720---------038999999999985896179998642367652465553101389704564671899996
Q gi|254780291|r  372 IILFADDIDRF---------SSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEM  442 (475)
Q Consensus       372 IILN~HD~~~~---------sSi~~KrmFks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem  442 (475)
                      +|+-+|..+-.         .....-..+..++...++..+|.||.|....+      .+..++++.|+...+.|..+++
T Consensus       176 ~iv~~hh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~GH~H~~~~~------~~~~~~v~~Gs~~~~~~~~~~~  249 (260)
T 2yvt_A          176 LVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVGKGHEL------VGNTIVVNPGEFEEGRYAFLDL  249 (260)
T ss_dssp             EEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSCCEEEE------ETTEEEEECCBGGGTEEEEEET
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCEEE------ECCEEEEECCCCCCCEEEEEEE
T ss_conf             3899850235665444443220112057888764029819999603077787------1998999836053585999998


Q ss_pred             CCCEEEEEEE
Q ss_conf             4885999998
Q gi|254780291|r  443 TPHYINVTAY  452 (475)
Q Consensus       443 ~~~~atITgY  452 (475)
                      .+..+.|.-|
T Consensus       250 ~~~~~~i~~~  259 (260)
T 2yvt_A          250 TQHKIKLEQF  259 (260)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCEEEEEEC
T ss_conf             1997999976