Query gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 475
No_of_seqs 13 out of 15
Neff 2.2
Searched_HMMs 23785
Date Tue May 24 15:04:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780291.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxf_A Putative dimetal phosph 99.4 9E-12 3.8E-16 96.1 13.2 254 161-455 7-314 (322)
2 3ib7_A ICC protein; metallopho 99.2 1.1E-09 4.8E-14 82.2 13.4 197 177-456 53-280 (330)
3 1ute_A Protein (II purple acid 99.2 3E-10 1.3E-14 86.0 10.4 236 162-457 9-293 (313)
4 2qfp_A Purple acid phosphatase 99.1 2.4E-09 1E-13 80.0 13.0 159 185-409 143-317 (424)
5 1xzw_A Purple acid phosphatase 99.1 6.3E-09 2.6E-13 77.3 14.8 180 162-410 129-325 (426)
6 3d03_A Phosphohydrolase; glyce 99.0 3.7E-09 1.6E-13 78.8 11.2 177 177-432 28-215 (274)
7 2yvt_A Hypothetical protein AQ 98.5 1.7E-06 7E-11 61.3 11.6 217 160-452 6-259 (260)
8 1uf3_A Hypothetical protein TT 98.5 6.6E-06 2.8E-10 57.4 13.2 216 160-450 6-225 (228)
9 1ii7_A MRE11 nuclease; RAD50, 97.3 0.00016 6.7E-09 48.2 3.5 68 168-235 19-92 (333)
10 2q8u_A Exonuclease, putative; 97.1 0.002 8.4E-08 41.0 7.8 196 177-445 49-269 (336)
11 2a22_A Vacuolar protein sortin 85.3 1.8 7.6E-05 21.5 7.4 63 391-458 133-205 (215)
12 1z2w_A Vacuolar protein sortin 84.6 1.9 8.1E-05 21.3 6.7 61 392-457 110-180 (192)
13 1su1_A Hypothetical protein YF 81.9 2.5 0.0001 20.6 5.5 66 162-230 28-100 (208)
14 2kkn_A Uncharacterized protein 74.4 3.2 0.00014 19.9 4.1 50 397-451 126-175 (178)
15 1nnw_A Hypothetical protein; s 64.9 6.4 0.00027 17.9 5.0 47 398-449 166-219 (252)
16 3ck2_A Conserved uncharacteriz 58.4 8.3 0.00035 17.1 7.0 57 394-455 100-163 (176)
17 1v77_A PH1877P, hypothetical p 55.7 7.2 0.0003 17.6 2.9 80 157-240 93-179 (212)
18 1s3l_A Hypothetical protein MJ 47.0 13 0.00053 15.9 4.8 60 162-230 28-87 (190)
19 1wb9_A DNA mismatch repair pro 37.4 18 0.00074 15.0 3.5 53 358-413 677-734 (800)
20 1wgo_A VPS10 domain-containing 37.1 8.9 0.00037 16.9 1.0 13 298-310 61-73 (123)
21 3f9u_A Putative exported cytoc 35.6 10 0.00042 16.6 1.0 22 357-378 35-56 (172)
22 2o8b_B DNA mismatch repair pro 32.7 21 0.00087 14.5 4.3 70 357-432 858-932 (1022)
23 3fk8_A Disulphide isomerase; A 32.5 19 0.00078 14.8 2.0 30 352-381 12-43 (133)
24 2kzw_A Uncharacterized protein 29.7 16 0.00067 15.3 1.3 14 296-309 86-99 (145)
25 3jqu_A Collagenase; PKD, beta 26.7 25 0.0011 13.9 1.8 12 299-310 35-46 (87)
26 1qwz_A NPQTN specific sortase 26.5 18 0.00074 15.0 1.0 18 216-233 72-89 (235)
27 1egz_A Endoglucanase Z, EGZ, C 23.9 29 0.0012 13.5 4.9 51 356-406 200-255 (291)
28 2o8b_A DNA mismatch repair pro 23.8 30 0.0012 13.5 4.8 54 357-413 731-789 (934)
29 2w70_A Biotin carboxylase; lig 22.3 32 0.0013 13.3 1.9 65 155-223 93-158 (449)
30 3mx1_A ECO29KIR; type II restr 22.2 26 0.0011 13.9 1.2 53 179-234 128-190 (235)
31 1sen_A Thioredoxin-like protei 22.0 27 0.0011 13.8 1.2 21 357-378 35-55 (164)
32 1w9c_A CRM1 protein, exportin 21.6 16 0.00069 15.2 0.1 17 349-365 263-279 (321)
33 1b4r_A Protein (PKD1_human); P 21.6 26 0.0011 13.9 1.1 12 297-308 25-36 (80)
34 1t71_A Phosphatase, conserved; 21.4 33 0.0014 13.2 2.5 70 163-233 8-77 (281)
35 1jni_A NAPB;, diheme cytochrom 21.4 10 0.00044 16.5 -1.0 26 138-163 40-66 (123)
36 1ogy_B Diheme cytochrome C NAP 20.4 13 0.00055 15.8 -0.6 26 138-163 41-67 (130)
No 1
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.39 E-value=9e-12 Score=96.06 Aligned_cols=254 Identities=12% Similarity=0.111 Sum_probs=132.1
Q ss_pred CEEEEECCCEE-CC----------------CHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHHHH-C
Q ss_conf 51555133100-46----------------31468899988611656789760510012------1267788888672-6
Q gi|254780291|r 161 GIAVIADPWYK-AD----------------TPMFVEAINSLKSSKNIILGILTGDMTQS------STTKELKRFYNIY-S 216 (475)
Q Consensus 161 ~~~~~~~pw~k-~~----------------~~~~vesinsl~~~~~~~~gIINGDLTeF------G~q~qL~eFr~Vw-n 216 (475)
-++||+||-|. .+ ...+.++|..+. ..++.|-|++|||++- +...+++++...+ +
T Consensus 7 ~f~~isD~h~~~~~~~~~~~~~~~~~~~~s~~~l~~ai~~~~-~~~~dfVv~~GDl~d~~~~~~~~~~~~~~~~~~~~~~ 85 (322)
T 2nxf_A 7 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWR-RERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA 85 (322)
T ss_dssp EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHH-HTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999983178777776523344303456666999999999973-3799999999987889885236899999999999986
Q ss_pred CCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEE
Q ss_conf 55751302455444788-87667454550000036888999999998776555666542100100134445655210377
Q gi|254780291|r 217 LKFPFFRGLGSQEYIGN-RPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISI 295 (475)
Q Consensus 217 l~iPv~lGLGNHDYqNN-~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei 295 (475)
+++|++...||||+... .++........ +..+..+.. ......
T Consensus 86 ~~~p~~~~~GNHD~~~~~~~~~~~~~~~~------------~~~~~~~~~----------~~~~~~-------------- 129 (322)
T 2nxf_A 86 CSVDVHHVWGNHEFYNFSRPSLLSSRLNS------------AQRTGTDTG----------SDLIGD-------------- 129 (322)
T ss_dssp TCSEEEECCCHHHHHHCCHHHHHTSTTCC------------CC------C----------EECGGG--------------
T ss_pred CCCCEEEECCCCCCCCCCCHHHCCCCCCC------------HHHHCCCCC----------CCCCCC--------------
T ss_conf 59978982687752223300000012341------------222112233----------222577--------------
Q ss_pred EEEEEEEEECCCEEEEEECCCCEEEEECCCCCC-----HHHHHHHHHCCCCCCEE--------EEEE----CCCCHHHHH
Q ss_conf 754433430273355540364103675167530-----01222210002565113--------4320----565577887
Q gi|254780291|r 296 SGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWS-----NIFTVAVPEHISKQDLP--------SHVS----NGSEISQWI 358 (475)
Q Consensus 296 ~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~-----~af~Iqv~n~Id~q~l~--------s~Vn----~~~~iskWL 358 (475)
.+...+.-..++.+++-++-..+.......... -.+.......+.....+ .... ....-..||
T Consensus 130 ~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~wl 209 (322)
T 2nxf_A 130 DIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWL 209 (322)
T ss_dssp TCCCEEEEEETTEEEEECCTTSBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHH
T ss_pred CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 87404764179769999657543444566565210011000012466621003553223555554444556889999999
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCC------HHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 888884034795799950047720------0389999999999858-961799986423676524655531013897045
Q gi|254780291|r 359 RDDVFQAQREGKYIILFADDIDRF------SSIDQKRMFEKFLTQS-KISTIFTTRFTSSPESYIKDSTGRPVRVYNINK 431 (475)
Q Consensus 359 ~~DL~~A~~~gK~IILN~HD~~~~------sSi~~KrmFks~itk~-nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGS 431 (475)
++.|..+++.++++|+.+|.-... .....-..+..++.++ +|.++|.||.|... +...+.| ++++..++
T Consensus 210 ~~~L~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~~~--~~~~~~g--i~~v~~~~ 285 (322)
T 2nxf_A 210 DAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGG--RCTDSSG--AQHITLEG 285 (322)
T ss_dssp HHHHHHHHHHTCEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEEEEEECSCTTCE--EEECTTS--CEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--EEECCCC--CEEEECCE
T ss_conf 9999862642874899992189777788763113499999999748984699947747886--3344489--76997780
Q ss_pred CCC-----CCEEEEEECCCEEEEEEEECC
Q ss_conf 646-----718999964885999998516
Q gi|254780291|r 432 NSK-----NEFILLEMTPHYINVTAYERR 455 (475)
Q Consensus 432 vpk-----NrF~~lem~~~~atITgY~~R 455 (475)
+.. +.|..+|+.+-.++|+||-+-
T Consensus 286 ~~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 314 (322)
T 2nxf_A 286 VIETPPHSHAFATAYLYEDRMVMKGRGRV 314 (322)
T ss_dssp GGGCCTTSCEEEEEEECSSEEEEEEEETS
T ss_pred ECCCCCCCCCEEEEEEECCEEEEEEEEEE
T ss_conf 20268999988999998999999989876
No 2
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.15 E-value=1.1e-09 Score=82.20 Aligned_cols=197 Identities=11% Similarity=0.135 Sum_probs=123.3
Q ss_pred HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHH-----CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 6889998861-16567897605100121267788888672-----65575130245544478887667454550000036
Q gi|254780291|r 177 FVEAINSLKS-SKNIILGILTGDMTQSSTTKELKRFYNIY-----SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCA 250 (475)
Q Consensus 177 ~vesinsl~~-~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-----nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA 250 (475)
|.+.+..+.+ ..+.-+-|++||||+.|...++++|++.. .+++|++.=.||||+..+
T Consensus 53 l~~~l~~i~~~~~~pD~vvitGDl~~~g~~~~y~~~~~~l~~~~~~~~~pv~~v~GNHD~~~~----------------- 115 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAE----------------- 115 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSCHHH-----------------
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-----------------
T ss_conf 999999998229899999989877899999999999999999875249977995787764455-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHH
Q ss_conf 88899999999877655566654210010013444565521037775443343027335554036410367516753001
Q gi|254780291|r 251 FIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 (475)
Q Consensus 251 ~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~a 330 (475)
|-++..++ .. -.+...|..++++.+++.++-..+.. ..+..
T Consensus 116 ------~~~~~~~~----------------~~------------~~~~~~~~~~~~~~~~~~ldt~~~~~---~~G~~-- 156 (330)
T 3ib7_A 116 ------LRKFLLDE----------------AP------------SMAPLDRVCMIDGLRIIVLDTSVPGH---HHGEI-- 156 (330)
T ss_dssp ------HHHHHHCC----------------CC------------CCSCCCEEEEETTEEEEECCCCCTTC---CSBCC--
T ss_pred ------HHHHHCCC----------------CC------------CCCCCEEEEEECCCEEEECCCCCCCC---CCCCC--
T ss_conf ------54431013----------------66------------66763047870783266436666787---68855--
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC------HHH--HHHHHHHHHHHHCCCCE
Q ss_conf 2222100025651134320565577887888884034795799950047720------038--99999999998589617
Q gi|254780291|r 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRF------SSI--DQKRMFEKFLTQSKIST 402 (475)
Q Consensus 331 f~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~~------sSi--~~KrmFks~itk~nV~A 402 (475)
..+--+||++.|.++ .++++|+.+|-.+.. .++ .....|..++++++|.+
T Consensus 157 --------------------~~~ql~wL~~~L~~~--~~~~~iv~~HHpp~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~ 214 (330)
T 3ib7_A 157 --------------------RASQLGWLAEELATP--APDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRA 214 (330)
T ss_dssp --------------------CHHHHHHHHHHTTSC--CTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEE
T ss_pred --------------------CHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf --------------------999999999988647--7887699981698567775334433444799999997469819
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEECCCC-----------------CCCEEEEEECCCEEEEEEEECCC
Q ss_conf 9998642367652465553101389704564-----------------67189999648859999985167
Q gi|254780291|r 403 IFTTRFTSSPESYIKDSTGRPVRVYNINKNS-----------------KNEFILLEMTPHYINVTAYERRG 456 (475)
Q Consensus 403 IF~aH~Hqshe~~lec~~GykVPvy~iGSvp-----------------kNrF~~lem~~~~atITgY~~Rd 456 (475)
||.||.|....... ..+|++..+|.. ..-|..+++....+..+.+-..+
T Consensus 215 vl~GH~H~~~~~~~-----~Gi~~~~~pst~~~~~~~~~~~~~~~~~~~~g~~~i~~~~d~~v~~~vp~~~ 280 (330)
T 3ib7_A 215 ILAGHLHYSTNATF-----VGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPLGG 280 (330)
T ss_dssp EEECSSSSCEEEEE-----TTEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEECSC
T ss_pred EEECCCCCCCEEEE-----CCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCC
T ss_conf 99777880493799-----9999999696253266777888755556899759999959977999997289
No 3
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.15 E-value=3e-10 Score=85.99 Aligned_cols=236 Identities=17% Similarity=0.167 Sum_probs=123.1
Q ss_pred EEEEEC----CCEECCCHH---HHHHHHHHHHCCCEEEEEEECCCC-CCCCHHHH-HHHHHHH--------CCCCCEEEC
Q ss_conf 155513----310046314---688999886116567897605100-12126778-8888672--------655751302
Q gi|254780291|r 162 IAVIAD----PWYKADTPM---FVEAINSLKSSKNIILGILTGDMT-QSSTTKEL-KRFYNIY--------SLKFPFFRG 224 (475)
Q Consensus 162 ~~~~~~----pw~k~~~~~---~vesinsl~~~~~~~~gIINGDLT-eFG~q~qL-~eFr~Vw--------nl~iPv~lG 224 (475)
++|++| +.....++. ..++++......+..|-|..||+. +.|...+. .+|.+.| ...+|+|.-
T Consensus 9 f~v~gD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pdfvl~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 88 (313)
T 1ute_A 9 FVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVL 88 (313)
T ss_dssp EEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEEEC
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99994699999754451789999999999986369989998998877788875217999999998753356518987984
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 455444788-8766745455000003688899999999877655566654210010013444565521037775443343
Q gi|254780291|r 225 LGSQEYIGN-RPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSW 303 (475)
Q Consensus 225 LGNHDYqNN-~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSW 303 (475)
+|||||.+| ..+. .+. . ....++.... .++..|.-
T Consensus 89 ~GNHd~~~~~~~~~-------------------------~~~-~--~~~~~~~~~~----------------~y~~~~~~ 124 (313)
T 1ute_A 89 AGNHDHLGNVSAQI-------------------------AYS-K--ISKRWNFPSP----------------YYRLRFKI 124 (313)
T ss_dssp CCHHHHHSCHHHHH-------------------------HGG-G--TSTTEECCSS----------------SEEEEEEC
T ss_pred CCCCCCCCCCCCCC-------------------------CHH-H--CCCCCCCCCC----------------CCCEECCC
T ss_conf 47656667632220-------------------------112-1--1545568887----------------64401046
Q ss_pred EC--CCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 02--733555403641036751675300122221000256-511343205655778878888840347957999500477
Q gi|254780291|r 304 NI--DNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISK-QDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDID 380 (475)
Q Consensus 304 d~--gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~-q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~ 380 (475)
.. +++.++.+++..|.... ...... ...+.......+-.+||+++|... ..+.+++.+|.-.
T Consensus 125 ~~~~~~~~~~~~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Q~~WL~~~L~~~--~~~~~iv~~hhp~ 189 (313)
T 1ute_A 125 PRSNVSVAIFMLDTVTLCGNS-------------DDFVSQQPERPRNLALARTQLAWIKKQLAAA--KEDYVLVAGHYPV 189 (313)
T ss_dssp TTSSCEEEEEECCHHHHHCCG-------------GGSTTCSCCSCSCHHHHHHHHHHHHHHHHHC--CCSEEEEECSSCS
T ss_pred CCCCCCEEEEECCCEEEEECC-------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCEEEEEECCC
T ss_conf 788970699981555687303-------------4444456666434223999999999999726--3567389982376
Q ss_pred -----CCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-----------------------CCCCEEEEEEECCC
Q ss_conf -----20038999999999985896179998642367652465-----------------------55310138970456
Q gi|254780291|r 381 -----RFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKD-----------------------STGRPVRVYNINKN 432 (475)
Q Consensus 381 -----~~sSi~~KrmFks~itk~nV~AIF~aH~Hqshe~~lec-----------------------~~GykVPvy~iGSv 432 (475)
...+-.....|..++.+++|.++|.||.|. ++++... .-.+.+++......
T Consensus 190 ~~~~~~~~~~~~~~~~~~ll~~~~V~~~~~GH~H~-~~~~~~~~~~~~~~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
T 1ute_A 190 WSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHN-LQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAEN 268 (313)
T ss_dssp SCCSSSCCCHHHHHHTHHHHHHTTCSEEEECSSSS-EEEEECTTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 44466787477889999999976944999588642-16774489978999698856678876566687533432350467
Q ss_pred CCCCEEEEEECCCEEEEEEEECCCC
Q ss_conf 4671899996488599999851676
Q gi|254780291|r 433 SKNEFILLEMTPHYINVTAYERRGK 457 (475)
Q Consensus 433 pkNrF~~lem~~~~atITgY~~Rd~ 457 (475)
...-|..+++++.+++++.|..-+.
T Consensus 269 ~~~gf~~i~v~~~~l~~~~~~~~G~ 293 (313)
T 1ute_A 269 SLGGFAYVEITPKEMSVTYIEASGK 293 (313)
T ss_dssp SCCEEEEEEECSSCEEEEEEETTSC
T ss_pred CCCEEEEEEEECCEEEEEEECCCCC
T ss_conf 8663999999899999999949998
No 4
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.10 E-value=2.4e-09 Score=80.02 Aligned_cols=159 Identities=12% Similarity=0.183 Sum_probs=96.3
Q ss_pred HHCCCEEEEEEECCCCC-----CCCHHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 61165678976051001-----21267788888672---65575130245544478887667454550000036888999
Q gi|254780291|r 185 KSSKNIILGILTGDMTQ-----SSTTKELKRFYNIY---SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAIND 256 (475)
Q Consensus 185 ~~~~~~~~gIINGDLTe-----FG~q~qL~eFr~Vw---nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav~~ 256 (475)
....+..|-+..||+.. ...+.+.++|.+.. .-.+|++..+|||||..+..-...+.+ -
T Consensus 143 ~~~~~pdfvl~~GD~~y~d~~~~~~~~~wd~~~~~~~~~~~~iP~~~~~GNHE~~~~~~~~~~~~~------~------- 209 (424)
T 2qfp_A 143 LSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPF------K------- 209 (424)
T ss_dssp TCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTTSCEEECCCHHHHCCBGGGTBCSTT------H-------
T ss_pred HCCCCCCEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCC------E-------
T ss_conf 655687659980437650555663036888999888788722965870676532257655667464------0-------
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99999877655566654210010013444565521037775443343027335554036410367516753001222210
Q gi|254780291|r 257 ISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVP 336 (475)
Q Consensus 257 M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~ 336 (475)
.|... |+.-. +.. .-.+..-||.++|++||+.++--.. +..
T Consensus 210 ------~~~~~------f~~p~-----~~~-------~~~~~~yYsfd~G~v~fi~lds~~~----~~~----------- 250 (424)
T 2qfp_A 210 ------PFSYR------YHVPY-----EAS-------QSTSPFWYSIKRASAHIIVLSSYSA----YGR----------- 250 (424)
T ss_dssp ------HHHHH------CCCCG-----GGG-------TCSSTTSEEEEETTEEEEECCTTSC----CST-----------
T ss_pred ------EEECC------CCCCC-----CCC-------CCCCCCEEEEEECCEEEEECCCCCC----CCC-----------
T ss_conf ------44211------35776-----666-------7888756999878888996147446----775-----------
Q ss_pred HCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC-EEEEECCCC---CCC----HHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 0025651134320565577887888884034795-799950047---720----03899999999998589617999864
Q gi|254780291|r 337 EHISKQDLPSHVSNGSEISQWIRDDVFQAQREGK-YIILFADDI---DRF----SSIDQKRMFEKFLTQSKISTIFTTRF 408 (475)
Q Consensus 337 n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK-~IILN~HD~---~~~----sSi~~KrmFks~itk~nV~AIF~aH~ 408 (475)
+.+--+||++||.++++... -+|+.+|.- ..- .....+..|+.++.+++|..||.||.
T Consensus 251 --------------~~~Q~~WL~~dL~~~~r~~~~w~iv~~H~P~ys~~~~~~~~~~~~r~~~~~lf~ky~Vdlvl~GH~ 316 (424)
T 2qfp_A 251 --------------GTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHV 316 (424)
T ss_dssp --------------TSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred --------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf --------------459999999998753125798699996888654587887666789999999999719759996985
Q ss_pred E
Q ss_conf 2
Q gi|254780291|r 409 T 409 (475)
Q Consensus 409 H 409 (475)
|
T Consensus 317 H 317 (424)
T 2qfp_A 317 H 317 (424)
T ss_dssp S
T ss_pred C
T ss_conf 6
No 5
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.09 E-value=6.3e-09 Score=77.32 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=102.6
Q ss_pred EEEEECCCEECCCHHHHHHHHHH-HHCCCEEEEEEECCCCCC-C----CHHHHHHHHHHH---CCCCCEEECCCCCCCCC
Q ss_conf 15551331004631468899988-611656789760510012-1----267788888672---65575130245544478
Q gi|254780291|r 162 IAVIADPWYKADTPMFVEAINSL-KSSKNIILGILTGDMTQS-S----TTKELKRFYNIY---SLKFPFFRGLGSQEYIG 232 (475)
Q Consensus 162 ~~~~~~pw~k~~~~~~vesinsl-~~~~~~~~gIINGDLTeF-G----~q~qL~eFr~Vw---nl~iPv~lGLGNHDYqN 232 (475)
+++++|.=...+. ...+..+ ....+..|-|..||+.-- | .+.+.++|.+.. .-.+|++..+|||||.+
T Consensus 129 f~~~GD~G~~~~~---~~~~~~~~~~~~~~dfvl~~GD~~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P~~~~~GNHE~~~ 205 (426)
T 1xzw_A 129 FGLIGDIGQTHDS---NTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDY 205 (426)
T ss_dssp EEEECSCTTBHHH---HHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSCEECCCCGGGCCC
T ss_pred EEEECCCCCCCCH---HHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 5364787888620---4899999870778758996577430464544215788899877677860496698347545566
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEE
Q ss_conf 88766745455000003688899999999877655566654210010013444565521037775443343027335554
Q gi|254780291|r 233 NRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQ 312 (475)
Q Consensus 233 N~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ 312 (475)
+.+-.. ...+. .|... |..... ... -...+-||.++|++||+.
T Consensus 206 ~~~~~~---------~~~~~----------~~~~~------f~~~~~----~~~--------~~~~~~Ysf~~g~v~fi~ 248 (426)
T 1xzw_A 206 APDIGE---------YQPFV----------PFTNR------YPTPHE----ASG--------SGDPLWYAIKRASAHIIV 248 (426)
T ss_dssp BGGGTB---------CSTTH----------HHHHH------SCCCCG----GGT--------CSSTTSEEEEETTEEEEE
T ss_pred CCCCCC---------CCCCC----------CHHHC------CCCCCC----CCC--------CCCCCEEEEECCEEEEEE
T ss_conf 666555---------44365----------27761------888644----567--------888855999817289999
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC-EEEEECCCCC--C-----CHH
Q ss_conf 0364103675167530012222100025651134320565577887888884034795-7999500477--2-----003
Q gi|254780291|r 313 ANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGK-YIILFADDID--R-----FSS 384 (475)
Q Consensus 313 ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK-~IILN~HD~~--~-----~sS 384 (475)
+|--.... ...+--+||++||..+++... -+|+.+|.-. . ...
T Consensus 249 lds~~~~~-----------------------------~~~~Q~~WL~~~L~~~~~~~~~w~iv~~H~P~y~s~~~~~~~~ 299 (426)
T 1xzw_A 249 LSSYSGFV-----------------------------KYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEG 299 (426)
T ss_dssp CCTTSCCS-----------------------------TTSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTT
T ss_pred ECCCCCCC-----------------------------CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 54666876-----------------------------5049999999999975433797599981888643576666677
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 89999999999858961799986423
Q gi|254780291|r 385 IDQKRMFEKFLTQSKISTIFTTRFTS 410 (475)
Q Consensus 385 i~~KrmFks~itk~nV~AIF~aH~Hq 410 (475)
...+..|+.++.+++|..||.||.|.
T Consensus 300 ~~~r~~l~~lf~~y~Vdlvl~GH~H~ 325 (426)
T 1xzw_A 300 EAMRAIFEPYFVYYKVDIVFSGHVHS 325 (426)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSSSS
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 88999999999981971999798556
No 6
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.02 E-value=3.7e-09 Score=78.81 Aligned_cols=177 Identities=13% Similarity=0.239 Sum_probs=103.8
Q ss_pred HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6889998861-16567897605100121267788888672-655751302455444788876674545500000368889
Q gi|254780291|r 177 FVEAINSLKS-SKNIILGILTGDMTQSSTTKELKRFYNIY-SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAI 254 (475)
Q Consensus 177 ~vesinsl~~-~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav 254 (475)
+.+.++.+.. ..+.-+-|+.|||++.|...+++.|++.- .+++|++.=.||||+.++
T Consensus 28 l~~~~~~i~~~~~~~D~vv~tGDl~~~~~~~~y~~~~~~l~~l~~p~~~v~GNHD~~~~--------------------- 86 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKAL--------------------- 86 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSCHHH---------------------
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH---------------------
T ss_conf 99999999832899999998875788998899999999998728878996788634678---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHH
Q ss_conf 99999998776555666542100100134445655210377754433430273355540364103675167530012222
Q gi|254780291|r 255 NDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVA 334 (475)
Q Consensus 255 ~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iq 334 (475)
+......+.++ +..+ .+...|+-+.+.++|+-++...+.. ..++
T Consensus 87 --~~~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~i~ldt~~~~~---~~~~------- 130 (274)
T 3d03_A 87 --FLEYLQPLCPQ------LGSD------------------ANNMRCAVDDFATRLLFIDSSRAGT---SKGW------- 130 (274)
T ss_dssp --HHHHHGGGSGG------GCSC------------------GGGCCEEECSSSSEEEECCCCCTTC---SSBC-------
T ss_pred --HHHHHHHHCCC------CCCC------------------CCCEEEEEECCCEEEEECCCCCCCC---CCCC-------
T ss_conf --89876543012------3567------------------7862699954875898425776788---7640-------
Q ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC------CH--HHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 10002565113432056557788788888403479579995004772------00--389999999999858-9617999
Q gi|254780291|r 335 VPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDR------FS--SIDQKRMFEKFLTQS-KISTIFT 405 (475)
Q Consensus 335 v~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~------~s--Si~~KrmFks~itk~-nV~AIF~ 405 (475)
+ .-+-.+||++.|..+.. +++++.+|-.+- +. ..+....|.+.+.++ +|.+||.
T Consensus 131 ----l-----------~~~~l~wL~~~L~~~~~--~~~iv~~Hhpp~~~~~~~~~~~~~~~~~~l~~~l~~~~~V~~vl~ 193 (274)
T 3d03_A 131 ----L-----------TDETISWLEAQLFEGGD--KPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFC 193 (274)
T ss_dssp ----C-----------CHHHHHHHHHHHHHHTT--SCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEE
T ss_pred ----C-----------CHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf ----1-----------59999999999875106--634999943874678865454246689999999983799329998
Q ss_pred EEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 864236765246555310138970456
Q gi|254780291|r 406 TRFTSSPESYIKDSTGRPVRVYNINKN 432 (475)
Q Consensus 406 aH~Hqshe~~lec~~GykVPvy~iGSv 432 (475)
||.|....... ..+|++...|.
T Consensus 194 GH~H~~~~~~~-----~gi~~~~~pst 215 (274)
T 3d03_A 194 GHNHSLTMTQY-----RQALISTLPGT 215 (274)
T ss_dssp CSSSSCEEEEE-----TTEEEEECCCS
T ss_pred CCCCHHHHEEE-----CCEEEEECCCC
T ss_conf 85480350699-----99999984841
No 7
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6
Probab=98.52 E-value=1.7e-06 Score=61.31 Aligned_cols=217 Identities=10% Similarity=0.072 Sum_probs=112.8
Q ss_pred CCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH---------------------------HHHHH
Q ss_conf 551555133100463146889998861165678976051001212677---------------------------88888
Q gi|254780291|r 160 KGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKE---------------------------LKRFY 212 (475)
Q Consensus 160 ~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~q---------------------------L~eFr 212 (475)
+-|++|.|=--.-+ +.+.+..+...+++-+=++.|||++.|...+ ++++.
T Consensus 6 ~~i~~isD~h~~~~---~l~~l~~~~~~~~~D~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
T 2yvt_A 6 RKVLAIKNFKERFD---LLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFF 82 (260)
T ss_dssp CEEEEEECCTTCGG---GHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 58999953799989---999999988774999999916878999875899999987645455077502663188999999
Q ss_pred HHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
Q ss_conf 672-6557513024554447888766745455000003688899999999877655566654210010013444565521
Q gi|254780291|r 213 NIY-SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETY 291 (475)
Q Consensus 213 ~Vw-nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~ 291 (475)
+.. +...|++.=.||||.-.... +....... ............
T Consensus 83 ~~~~~~~~~~~~i~GNHD~~~~~~---------------------~~~~~~~~---------~~~~~~~~~~~~------ 126 (260)
T 2yvt_A 83 REIGELGVKTFVVPGKNDAPLKIF---------------------LRAAYEAE---------TAYPNIRVLHEG------ 126 (260)
T ss_dssp HHHHTTCSEEEEECCTTSCCHHHH---------------------HHHHHHTT---------TTCTTEEECSSE------
T ss_pred HHHHHCCCCEEEECCCCCHHHHHH---------------------HHHHCCCC---------CCCCCCCCCCCE------
T ss_conf 999855996388628861766545---------------------66641642---------123442123424------
Q ss_pred EEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 03777544334302733555403641036751675300122221000256511343205655778878888840347957
Q gi|254780291|r 292 SISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKY 371 (475)
Q Consensus 292 ~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~ 371 (475)
.+...+ +.+-.+...+.- ... ...++ ........-.|++..+.+.. ...
T Consensus 127 ~~~~~~---~~~~~~~~~~~~--~~~---------~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~ 175 (260)
T 2yvt_A 127 FAGWRG---EFEVIGFGGLLT--EHE---------FEEDF---------------VLKYPRWYVEYILKFVNELK--PRR 175 (260)
T ss_dssp EEEETT---TEEEEEECSEEE--SSC---------CBSSS---------------SCEEEHHHHHHHGGGGGGSC--CCE
T ss_pred EEEECC---CEEEEEECCCCC--CCC---------CCHHH---------------HHHHHHHHHHHHHHHHHHHC--CCC
T ss_conf 899539---779998457768--744---------53044---------------44345678999987653202--355
Q ss_pred EEEECCCCCCC---------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 99950047720---------038999999999985896179998642367652465553101389704564671899996
Q gi|254780291|r 372 IILFADDIDRF---------SSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEM 442 (475)
Q Consensus 372 IILN~HD~~~~---------sSi~~KrmFks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem 442 (475)
+++.+|-.+.. ........+...++..++..++.||.|+.... .++.++++.||+..++|..+|+
T Consensus 176 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~GH~H~~~~~------~g~~~iv~pGs~~~~~y~~i~~ 249 (260)
T 2yvt_A 176 LVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVGKGHEL------VGNTIVVNPGEFEEGRYAFLDL 249 (260)
T ss_dssp EEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSCCEEEE------ETTEEEEECCBGGGTEEEEEET
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEE------ECCEEEEECCCCCCCCEEEEEE
T ss_conf 0578853873224554532220136799999987619979999544688487------5987999899554491799998
Q ss_pred CCCEEEEEEE
Q ss_conf 4885999998
Q gi|254780291|r 443 TPHYINVTAY 452 (475)
Q Consensus 443 ~~~~atITgY 452 (475)
+++.+.+.-|
T Consensus 250 ~~~~~~~~~~ 259 (260)
T 2yvt_A 250 TQHKIKLEQF 259 (260)
T ss_dssp TTTEEEEEEC
T ss_pred CCCEEEEEEC
T ss_conf 3996999977
No 8
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.45 E-value=6.6e-06 Score=57.35 Aligned_cols=216 Identities=9% Similarity=0.105 Sum_probs=108.8
Q ss_pred CCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-HHHHHHHHHH-CCCCCEEECCCCCCCCCCCCCC
Q ss_conf 5515551331004631468899988611656789760510012126-7788888672-6557513024554447888766
Q gi|254780291|r 160 KGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTT-KELKRFYNIY-SLKFPFFRGLGSQEYIGNRPCR 237 (475)
Q Consensus 160 ~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q-~qL~eFr~Vw-nl~iPv~lGLGNHDYqNN~dC~ 237 (475)
|-|+++.|+--..+ .+ |.+-.+......-+=|+.|||++.|.. .+..++-..- ..+.|++.=.||||..-
T Consensus 6 ~~i~~~~d~hg~~~--al-e~~l~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~----- 77 (228)
T 1uf3_A 6 RYILATSNPMGDLE--AL-EKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPI----- 77 (228)
T ss_dssp CEEEEEECCTTCHH--HH-HHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSH-----
T ss_pred EEEEEEECCCCCHH--HH-HHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH-----
T ss_conf 29999956889999--99-99999877729999998788699987829999999974045775899968998167-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCC
Q ss_conf 74545500000368889999999987765556665421001001344456552103777544334302733555403641
Q gi|254780291|r 238 DPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSM 317 (475)
Q Consensus 238 ~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYps 317 (475)
.+ . +..-..... ...... .-...+.+..+.+.++....+.
T Consensus 78 --------~~--~------~~~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 117 (228)
T 1uf3_A 78 --------WE--Y------LREAANVEL--------VHPEMR----------------NVHETFTFWRGPYLVAGVGGEI 117 (228)
T ss_dssp --------HH--H------HHHHHHHHH--------HCTTEE----------------ECBTSEEEETTTEEEEEECSEE
T ss_pred --------HH--H------HHHHCCCCC--------CCCCCC----------------CCCCEEEEECCCEEEEECCCCC
T ss_conf --------52--0------355314211--------234220----------------0132268841877787417744
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHH
Q ss_conf 036751675300122221000256511343205655778878888840347957999500477200389--999999999
Q gi|254780291|r 318 FHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSID--QKRMFEKFL 395 (475)
Q Consensus 318 y~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~~sSi~--~KrmFks~i 395 (475)
+.. ...+. ...+-....-..|+.+.+..... ...++-.|..+...... .-..+.+.+
T Consensus 118 ~~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~ 176 (228)
T 1uf3_A 118 ADE---GEPEE----------------HEALRYPAWVAEYRLKALWELKD--YPKIFLFHTMPYHKGLNEQGSHEVAHLI 176 (228)
T ss_dssp ESS---SCCBS----------------SSSCEEEHHHHHHHHGGGGGSCS--CCEEEEESSCBCBTTTBTTSBHHHHHHH
T ss_pred CCC---CCCCH----------------HHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 677---77602----------------32334458899999998664035--5148987138876532334625565555
Q ss_pred HHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEE
Q ss_conf 8589617999864236765246555310138970456467189999648859999
Q gi|254780291|r 396 TQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEMTPHYINVT 450 (475)
Q Consensus 396 tk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem~~~~atIT 450 (475)
+..++..++.||.|+.++.. ++..+++.|++..|+|..+|++...+...
T Consensus 177 ~~~~~~l~~~GH~H~~~~~~------~~~~~in~Gs~~~g~y~i~d~~~~~v~~~ 225 (228)
T 1uf3_A 177 KTHNPLLVLVAGKGQKHEML------GASWVVVPGDLSEGEYSLLDLRARKLETG 225 (228)
T ss_dssp HHHCCSEEEECCSSCEEEEE------TTEEEEECCBGGGTEEEEEETTTTEEEEE
T ss_pred HHCCCCEEEECCCCCCCEEE------CCEEEEECCCCCCCCEEEEEECCCEEEEE
T ss_conf 50288679957846661388------98899988876458279999519989998
No 9
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=97.26 E-value=0.00016 Score=48.24 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=45.5
Q ss_pred CCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--HHHHHHHHHHH----CCCCCEEECCCCCCCCCCCC
Q ss_conf 3100463146889998861165678976051001212--67788888672----65575130245544478887
Q gi|254780291|r 168 PWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSST--TKELKRFYNIY----SLKFPFFRGLGSQEYIGNRP 235 (475)
Q Consensus 168 pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~--q~qL~eFr~Vw----nl~iPv~lGLGNHDYqNN~d 235 (475)
++...+...+.+.+-..-..+++-+=++.|||.+.+. ...+..+.... ..++|++.=.||||+..+..
T Consensus 19 ~~~~~~~~~~~~~~v~~a~~~~vD~vli~GDlfd~~~~~~~~~~~~~~~~~~l~~~~ipv~~i~GNHD~~~~~~ 92 (333)
T 1ii7_A 19 PQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGP 92 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCH
T ss_conf 45799999999999999987399999989887889989999999999999999868995999646666210003
No 10
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=97.11 E-value=0.002 Score=41.01 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=97.4
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCC---HHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 6889998861165678976051001212---67788888672---65575130245544478887667454550000036
Q gi|254780291|r 177 FVEAINSLKSSKNIILGILTGDMTQSST---TKELKRFYNIY---SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCA 250 (475)
Q Consensus 177 ~vesinsl~~~~~~~~gIINGDLTeFG~---q~qL~eFr~Vw---nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA 250 (475)
+.+.+-..-...++-+=++.|||++.+. ...+..+.... +-++|+|.=.||||+.+...
T Consensus 49 ~l~~i~~~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~GNHD~~~~~~--------------- 113 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKL--------------- 113 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC------CHH---------------
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHC---------------
T ss_conf 99999999997499999989877779998889999999999998742897899457646410001---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHH
Q ss_conf 88899999999877655566654210010013444565521037775443343027335554036410367516753001
Q gi|254780291|r 251 FIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 (475)
Q Consensus 251 ~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~a 330 (475)
....... +..........- .+.+ +....+.++++-..|+....+..
T Consensus 114 ------~~~~~~~----------~~~~~~~~~~~~------~~~~-----~~~~~~~v~~~~~~~~~~~~~~~------- 159 (336)
T 2q8u_A 114 ------FGNFVTS----------ISSDITFVMSFE------PVDV-----EAKRGQKVRILPFPYPDESEALR------- 159 (336)
T ss_dssp ------HHHHHHH----------HCSSEEECCSSS------CEEE-----ECTTSCEEEEEEECCC--------------
T ss_pred ------CHHHHHH----------CCCCCEECCCCC------CEEE-----ECCCCCEEEEECCCCCCCCCCCC-------
T ss_conf ------1002221----------045500114556------5688-----70279669994366643000123-------
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHH----HHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHH-----HHHHHHHHCCC
Q ss_conf 2222100025651134320565577----887888884034795799950047-7200389999-----99999985896
Q gi|254780291|r 331 FTVAVPEHISKQDLPSHVSNGSEIS----QWIRDDVFQAQREGKYIILFADDI-DRFSSIDQKR-----MFEKFLTQSKI 400 (475)
Q Consensus 331 f~Iqv~n~Id~q~l~s~Vn~~~~is----kWL~~DL~~A~~~gK~IILN~HD~-~~~sSi~~Kr-----mFks~itk~nV 400 (475)
....+.. +++++-+..+...+.+.|+-+|.. ..+....... .+...+...++
T Consensus 160 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~I~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (336)
T 2q8u_A 160 ------------------KNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVV 221 (336)
T ss_dssp ------------------CCSSHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTS
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf ------------------33067889999999999987326466539987542157666675223765455166631386
Q ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCC---------CCEEEEEECCC
Q ss_conf 1799986423676524655531013897045646---------71899996488
Q gi|254780291|r 401 STIFTTRFTSSPESYIKDSTGRPVRVYNINKNSK---------NEFILLEMTPH 445 (475)
Q Consensus 401 ~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpk---------NrF~~lem~~~ 445 (475)
..|+-||.|.....- .+-.++|.||... .-|.++|+++.
T Consensus 222 d~v~~GH~H~~~~~~------~~~~i~y~Gs~~~~~~~E~~~~kg~~lvdi~~~ 269 (336)
T 2q8u_A 222 DYAALGHIHSFREIQ------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRG 269 (336)
T ss_dssp SEEEEESCSSCEEEE------ETTEEEECCCSSCCSGGGTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCEEEC------CCCCEEECCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 289927775755877------999889738962677251479987999998289
No 11
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=85.29 E-value=1.8 Score=21.52 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=46.7
Q ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC----------CEEEEEECCCEEEEEEEECCCCC
Q ss_conf 999998589617999864236765246555310138970456467----------18999964885999998516763
Q gi|254780291|r 391 FEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKN----------EFILLEMTPHYINVTAYERRGKV 458 (475)
Q Consensus 391 Fks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkN----------rF~~lem~~~~atITgY~~Rd~t 458 (475)
+..+....++..++.||-|..- .+. ..++-++|-||+... -|.++|+++..+++.-|+-++.-
T Consensus 133 l~~~~~~~~~dvvv~GHTH~p~---~~~--~~g~l~iNPGS~~~~r~~~~~~~~pS~aiLdi~~~~v~v~~y~l~~~~ 205 (215)
T 2a22_A 133 LEQWQRRLDCDILVTGHTHKLR---VFE--KNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGK 205 (215)
T ss_dssp HHHHHHHHTCSEEEECSSCCCE---EEE--ETTEEEEECCCSSCCCCTTSTTCCCEEEEEEEETTEEEEEEEEEETTE
T ss_pred HHHHHHCCCCCEEEECCCCCCC---EEE--ECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCE
T ss_conf 9998750289989979989764---799--999999948987777778788888889999998999999999934992
No 12
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A
Probab=84.61 E-value=1.9 Score=21.32 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC--CC--------CEEEEEECCCEEEEEEEECCCC
Q ss_conf 999985896179998642367652465553101389704564--67--------1899996488599999851676
Q gi|254780291|r 392 EKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS--KN--------EFILLEMTPHYINVTAYERRGK 457 (475)
Q Consensus 392 ks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp--kN--------rF~~lem~~~~atITgY~~Rd~ 457 (475)
....+....-.||.||-|.... +.. .+.-|+|-||+. ++ -|-.+|+++..+++.-|+..+.
T Consensus 110 ~~~~~~~~~divi~GHTH~p~~---~~~--~~~~iiNPGS~~~pr~~~~~~~~~syaIld~~~~~v~~~~~~l~~~ 180 (192)
T 1z2w_A 110 ALLQRQFDVDILISGHTHKFEA---FEH--ENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGD 180 (192)
T ss_dssp HHHHHHHSSSEEECCSSCCCEE---EEE--TTEEEEECCCTTCCCCSSCSCCCCEEEEEEEETTEEEEEEEEEETT
T ss_pred HHHHHHCCCCEEEECCCCCCEE---EEE--CCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 9998735899899788785038---999--9999997998888888988888778999998399999999993599
No 13
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=81.94 E-value=2.5 Score=20.63 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=42.9
Q ss_pred EEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH------HHH-HHHHCCCCCEEECCCCCCC
Q ss_conf 15551331004631468899988611656789760510012126778------888-8672655751302455444
Q gi|254780291|r 162 IAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKEL------KRF-YNIYSLKFPFFRGLGSQEY 230 (475)
Q Consensus 162 ~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL------~eF-r~Vwnl~iPv~lGLGNHDY 230 (475)
|++|+|-- .+.+. .+++-....+..+-.=|+.||++..|....+ .+. ....+++.|++.-.||||.
T Consensus 28 i~viSDiH--gn~~a-le~vl~~~~~~~~D~ii~lGDlv~~gp~~~~~~~~~~~~~l~~l~~~~~~~~~V~GNhD~ 100 (208)
T 1su1_A 28 LMFASDIH--GSLPA-TERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDS 100 (208)
T ss_dssp EEEECCCT--TBHHH-HHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCC
T ss_pred EEEEEECC--CCHHH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 99993168--99899-999999987569988999166013376520111128099999998549967996477837
No 14
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=74.40 E-value=3.2 Score=19.85 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=37.9
Q ss_pred HCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf 5896179998642367652465553101389704564671899996488599999
Q gi|254780291|r 397 QSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEMTPHYINVTA 451 (475)
Q Consensus 397 k~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem~~~~atITg 451 (475)
..+...++.||-|.... + .-+++-++|-||+..+.|..++++...+++.=
T Consensus 126 ~~~~divi~GHTH~~~~---~--~~~~~~iiNPGS~~~~syail~ie~~~v~~ei 175 (178)
T 2kkn_A 126 NEKPQVILFGHTHEPED---T--VKAGVRFLNPGSLAEGSYAVLELDGGEVRFEL 175 (178)
T ss_dssp SSCCSEEECCSCSSCCE---E--EETTEEEECCCCTTTTEEEEEEEETTEEEEEE
T ss_pred HCCCCEEEECCCCCCEE---E--EECCEEEEECCCCCCCEEEEEEEECCEEEEEE
T ss_conf 13898899688565218---9--98999999798999986999999899999999
No 15
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=64.88 E-value=6.4 Score=17.87 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=33.1
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC-------CCCEEEEEECCCEEEE
Q ss_conf 896179998642367652465553101389704564-------6718999964885999
Q gi|254780291|r 398 SKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS-------KNEFILLEMTPHYINV 449 (475)
Q Consensus 398 ~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp-------kNrF~~lem~~~~atI 449 (475)
.+...++.||.|....... ....+++.||+- +..|.++|.+...+++
T Consensus 166 ~~~~~vv~GHtH~~~~~~~-----~~~~~iN~Gsvg~~~~~~~~~~y~i~d~~~~~v~~ 219 (252)
T 1nnw_A 166 KDYEMLIVASPMYPVDAMT-----RYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKF 219 (252)
T ss_dssp TTSSEEEESTTCSEEEEEE-----TTEEEEEECCSSSCSSSSCCEEEEEEETTTCCEEE
T ss_pred CCCCEEEECCCCEEEEEEE-----CCCEEECCCEEEECCCCCCCCEEEEEECCCCEEEE
T ss_conf 4662489724744678860-----78368718616007899987779999937987999
No 16
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7
Probab=58.36 E-value=8.3 Score=17.12 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=41.2
Q ss_pred HHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC-------CCCEEEEEECCCEEEEEEEECC
Q ss_conf 9985896179998642367652465553101389704564-------6718999964885999998516
Q gi|254780291|r 394 FLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS-------KNEFILLEMTPHYINVTAYERR 455 (475)
Q Consensus 394 ~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp-------kNrF~~lem~~~~atITgY~~R 455 (475)
.....+...+|.||-|...... . +.+-++|-||+- ...|-++|.+....++.-|..-
T Consensus 100 ~~~~~~~divi~GHTH~p~~~~---~--~~~~iiNPGSvg~pr~~~~~~syail~~~~~~~~v~~~~~d 163 (176)
T 3ck2_A 100 WAQEEEAAICLYGHLHVPSAWL---E--GKILFLNPGSISQPRGTIRECLYARVEIDDSYFKVDFLTRD 163 (176)
T ss_dssp HHHHTTCSEEECCSSCCEEEEE---E--TTEEEEEECCSSSCCTTCCSCCEEEEEECSSEEEEEEECTT
T ss_pred HHHHCCCCEEEECCCCCCEEEE---E--CCEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEC
T ss_conf 9985599899968977425999---8--99999935886677899985689999981999999999858
No 17
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=55.66 E-value=7.2 Score=17.55 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=58.2
Q ss_pred CCCCCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCC--CCC-CHHHHHHHHHHH----CCCCCEEECCCCCC
Q ss_conf 20155155513310046314688999886116567897605100--121-267788888672----65575130245544
Q gi|254780291|r 157 CHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMT--QSS-TTKELKRFYNIY----SLKFPFFRGLGSQE 229 (475)
Q Consensus 157 ~~~~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLT--eFG-~q~qL~eFr~Vw----nl~iPv~lGLGNHD 229 (475)
|.+ ++-+++-||..--..-|-.....+-..+++++.|-++.+- ..| +..-+..+++++ ..++|+..+-|.|.
T Consensus 93 ~e~-~VDiL~~P~~~r~d~gi~hvlak~A~e~gValEIn~s~ll~~~~~~R~~~l~n~~~ll~L~kky~~piVvsSdAhs 171 (212)
T 1v77_A 93 IEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQE 171 (212)
T ss_dssp HHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSS
T ss_pred HHC-CCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 717-9548956865467778578999999978918999762764479864789999999999999981998899769998
Q ss_pred CCCCCCCCCCC
Q ss_conf 47888766745
Q gi|254780291|r 230 YIGNRPCRDPY 240 (475)
Q Consensus 230 YqNN~dC~~P~ 240 (475)
- .+++.|.
T Consensus 172 ~---~dlrsp~ 179 (212)
T 1v77_A 172 K---WDVRYPR 179 (212)
T ss_dssp G---GGCCCHH
T ss_pred H---HHCCCHH
T ss_conf 2---0127999
No 18
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=46.99 E-value=13 Score=15.95 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=37.4
Q ss_pred EEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf 155513310046314688999886116567897605100121267788888672655751302455444
Q gi|254780291|r 162 IAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEY 230 (475)
Q Consensus 162 ~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDY 230 (475)
|++|+|-- .|-+.+ +++-....++++-.=|.-||++..+- ++++. ++..|++--.||||.
T Consensus 28 I~iiSDiH--gn~~al-e~vl~~~~~~~~D~vi~lGDiv~~~~---~~~l~---~~~~~~~~V~GNhD~ 87 (190)
T 1s3l_A 28 IGIMSDTH--DHLPNI-RKAIEIFNDENVETVIHCGDFVSLFV---IKEFE---NLNANIIATYGNNDG 87 (190)
T ss_dssp EEEECCCT--TCHHHH-HHHHHHHHHSCCSEEEECSCCCSTHH---HHHGG---GCSSEEEEECCTTCC
T ss_pred EEEEECCC--CCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHH---HHHHH---HCCCCEEEEECCCCC
T ss_conf 99998089--996999-99999997559999998788389899---99987---347608997276543
No 19
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=37.38 E-value=18 Score=14.99 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 788888403479579995004-77200389----999999999858961799986423676
Q gi|254780291|r 358 IRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPE 413 (475)
Q Consensus 358 L~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe 413 (475)
+..=|..|..++++|+ +- +-+.++.| +..+.+.++++.+..++|.+|||+=.+
T Consensus 677 ~~~il~~at~~SLvii---DElGrGTst~DG~aia~avle~l~~~~~~~~lfaTH~~eL~~ 734 (800)
T 1wb9_A 677 TANILHNATEYSLVLM---DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp HHHHHHHCCTTEEEEE---ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHHHCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 9999985899829998---059999985999999999999998636988999895089988
No 20
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=37.12 E-value=8.9 Score=16.93 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=9.9
Q ss_pred EEEEEEECCCEEE
Q ss_conf 4433430273355
Q gi|254780291|r 298 SQSYSWNIDNVHF 310 (475)
Q Consensus 298 SLSYSWd~gdvHf 310 (475)
+++|+|||||-..
T Consensus 61 ~~sy~WDFGDG~~ 73 (123)
T 1wgo_A 61 TTKYQVDLGDGFK 73 (123)
T ss_dssp SCEEEEECSSSCE
T ss_pred CEEEEEEECCCCC
T ss_conf 1689999089971
No 21
>3f9u_A Putative exported cytochrome C biogenesis- related protein; structural genomics, PSI-2, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=35.58 E-value=10 Score=16.60 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCEEEEECCC
Q ss_conf 8788888403479579995004
Q gi|254780291|r 357 WIRDDVFQAQREGKYIILFADD 378 (475)
Q Consensus 357 WL~~DL~~A~~~gK~IILN~HD 378 (475)
.++..|.+|+.+||+|+|+|.-
T Consensus 35 d~~~al~~Ak~~gKpvll~F~A 56 (172)
T 3f9u_A 35 DYDLGMEYARQHNKPVMLDFTG 56 (172)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999999999839939999976
No 22
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=32.74 E-value=21 Score=14.51 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 8788888403479579995004-77200389----999999999858961799986423676524655531013897045
Q gi|254780291|r 357 WIRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINK 431 (475)
Q Consensus 357 WL~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGS 431 (475)
=+..=|..|..+++++| +- +-+.++.| +-.+.+.+.++.+..++|.+|||+=.+-. .....|..+....
T Consensus 858 e~~~IL~~at~~SLVll---DElGrGTst~dG~aIA~avle~L~~~~~~~~lfaTHy~~L~~~~---~~~~~v~~~~m~~ 931 (1022)
T 2o8b_B 858 ETASILMHATAHSLVLV---DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY---SQNVAVRLGHMAC 931 (1022)
T ss_dssp HHHHHHHHCCTTCEEEE---ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT---SSCSSEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH---HCCCCEEEEEEEE
T ss_conf 99999985899848998---23889988578999999999999863698599968838999866---4084406635788
Q ss_pred C
Q ss_conf 6
Q gi|254780291|r 432 N 432 (475)
Q Consensus 432 v 432 (475)
.
T Consensus 932 ~ 932 (1022)
T 2o8b_B 932 M 932 (1022)
T ss_dssp C
T ss_pred E
T ss_conf 8
No 23
>3fk8_A Disulphide isomerase; APC61824.1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.30A {Xylella fastidiosa TEMECULA1}
Probab=32.54 E-value=19 Score=14.81 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEECCC--CCC
Q ss_conf 557788788888403479579995004--772
Q gi|254780291|r 352 SEISQWIRDDVFQAQREGKYIILFADD--IDR 381 (475)
Q Consensus 352 ~~iskWL~~DL~~A~~~gK~IILN~HD--~~~ 381 (475)
.+...-+++-|..|+.+||+++|+|.- |+.
T Consensus 12 ~~~~~d~~~~l~~a~~~~K~vlv~F~a~WC~~ 43 (133)
T 3fk8_A 12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTD 43 (133)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 77288899999999985992999994691930
No 24
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=29.70 E-value=16 Score=15.25 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=11.0
Q ss_pred EEEEEEEEECCCEE
Q ss_conf 75443343027335
Q gi|254780291|r 296 SGSQSYSWNIDNVH 309 (475)
Q Consensus 296 ~GSLSYSWd~gdvH 309 (475)
.+..+|.|||||-.
T Consensus 86 ~~~~~~~WdFgdG~ 99 (145)
T 2kzw_A 86 ENATSRLWMFGDGN 99 (145)
T ss_dssp BSCSEEEECCSSSS
T ss_pred CCCCEEEEEECCCC
T ss_conf 99758899909998
No 25
>3jqu_A Collagenase; PKD, beta barrel, cell adhesion; 1.40A {Clostridium histolyticum} PDB: 3js7_A
Probab=26.71 E-value=25 Score=13.94 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.2
Q ss_pred EEEEEECCCEEE
Q ss_conf 433430273355
Q gi|254780291|r 299 QSYSWNIDNVHF 310 (475)
Q Consensus 299 LSYSWd~gdvHf 310 (475)
++|.|++||--.
T Consensus 35 ~~y~W~fgdG~~ 46 (87)
T 3jqu_A 35 VSYDWDFGDGAT 46 (87)
T ss_dssp EEEEEECSSSCE
T ss_pred EEEEEEECCCCE
T ss_conf 999999499988
No 26
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=26.46 E-value=18 Score=14.99 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=11.9
Q ss_pred CCCCCEEECCCCCCCCCC
Q ss_conf 655751302455444788
Q gi|254780291|r 216 SLKFPFFRGLGSQEYIGN 233 (475)
Q Consensus 216 nl~iPv~lGLGNHDYqNN 233 (475)
++..|++.|-.||||-|-
T Consensus 72 slnypvlqgktnhdylnl 89 (235)
T 1qwz_A 72 SLNYPVLQGKTNHDYLNL 89 (235)
T ss_dssp SCEEEEECCSSSSTTTSB
T ss_pred CCCCHHHCCCCCCCCCCC
T ss_conf 347553247676540436
No 27
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=23.89 E-value=29 Score=13.50 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCCEEEEECCC---CCC--CHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88788888403479579995004---772--0038999999999985896179998
Q gi|254780291|r 356 QWIRDDVFQAQREGKYIILFADD---IDR--FSSIDQKRMFEKFLTQSKISTIFTT 406 (475)
Q Consensus 356 kWL~~DL~~A~~~gK~IILN~HD---~~~--~sSi~~KrmFks~itk~nV~AIF~a 406 (475)
+++++.+..+...|+|+++.=-- ++. .........|-++++++++.-+|-+
T Consensus 200 ~~~~~~~~~~~~~~~Pv~~gEfG~~~~~~~~~~~~~~~~~~~~~~~~~~igw~~W~ 255 (291)
T 1egz_A 200 ESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWA 255 (291)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTSCSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 78999999998759985863027867788876489999999999998599789997
No 28
>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A*
Probab=23.76 E-value=30 Score=13.48 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 8788888403479579995004-77200389----999999999858961799986423676
Q gi|254780291|r 357 WIRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPE 413 (475)
Q Consensus 357 WL~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe 413 (475)
=+..=|..|..+++++| +- +-+.++.| +..+.+.+.++.+..++|+||||+=.+
T Consensus 731 e~~~il~~at~~SLvll---DElgrGT~~~dG~aia~aile~l~~~~~~~~lfaTH~~eL~~ 789 (934)
T 2o8b_A 731 ETASILRSATKDSLIII---DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHHHHHTTCCTTSEEEE---ESCCCSSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSTT
T ss_pred HHHHHHHHCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 99999983899839998---218899985678999999999998647987999885288988
No 29
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=22.33 E-value=32 Score=13.30 Aligned_cols=65 Identities=9% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCEEE
Q ss_conf 0220155155513310046314688999886116567897605100121267788888672-65575130
Q gi|254780291|r 155 LNCHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIY-SLKFPFFR 223 (475)
Q Consensus 155 ~~~~~~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-nl~iPv~l 223 (475)
..|...|+..|.-++--++. +-+-+.+-.-.+.+-.-++-| +++.-.+..++.+..- .+++|+.+
T Consensus 93 ~~~~~~Gi~fIGPs~~~i~~--~gDK~~ar~la~~~gvp~ip~--~~~~~~~~~~ea~~~a~~iGyPViI 158 (449)
T 2w70_A 93 EQVERSGFIFIGPKAETIRL--MGDKVSAIAAMKKAGVPCVPG--SDGPLGDDMDKNRAIAKRIGYPVII 158 (449)
T ss_dssp HHHHHTTCEESSSCHHHHHH--HHSHHHHHHHHHHHTCCBCSB--CSSCCCSCHHHHHHHHHHHCSSEEE
T ss_pred HHHHHCCCEEECCCHHHHHH--HCCHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 88998899288889999987--409899999999859996898--7666688599999999866996688
No 30
>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease, HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
Probab=22.17 E-value=26 Score=13.89 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHCCC-------EEEEEEECC---CCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
Q ss_conf 89998861165-------678976051---001212677888886726557513024554447888
Q gi|254780291|r 179 EAINSLKSSKN-------IILGILTGD---MTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNR 234 (475)
Q Consensus 179 esinsl~~~~~-------~~~gIINGD---LTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDYqNN~ 234 (475)
|--.|+..+.+ .+|-|+.+. +---+.+.--..|+-+||- ..-|.||||=...+
T Consensus 128 eH~rSI~~~~nLd~~DF~cR~lV~~~~~s~wIpl~Es~LIr~~~P~WN~---~iDGFGnHDPG~gR 190 (235)
T 3mx1_A 128 EHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVQAALIKIYKPLWNT---VVDGFGNHTPGAGR 190 (235)
T ss_dssp HHHHHHHTCSSCCGGGEEEEEEECCSGGGGGHHHHHHHHHHHHCCHHHH---TSCCTTCCCCCSSC
T ss_pred HHHHHHHCCCCCCHHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHC---CCCCCCCCCCCCCC
T ss_conf 9998774025998667489999982575413568999999860730330---45555578998665
No 31
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=21.97 E-value=27 Score=13.77 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCCCEEEEECCC
Q ss_conf 8788888403479579995004
Q gi|254780291|r 357 WIRDDVFQAQREGKYIILFADD 378 (475)
Q Consensus 357 WL~~DL~~A~~~gK~IILN~HD 378 (475)
| +.-|..|..+|||++++|.-
T Consensus 35 ~-~eal~~Ak~~~Kpvlv~F~a 55 (164)
T 1sen_A 35 L-EDGKKEAAASGLPLMVIIHK 55 (164)
T ss_dssp H-HHHHHHHHHHTCCEEEEEEC
T ss_pred H-HHHHHHHHHCCCCEEEEECC
T ss_conf 9-99999999819979999888
No 32
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=21.64 E-value=16 Score=15.19 Aligned_cols=17 Identities=12% Similarity=0.170 Sum_probs=10.2
Q ss_pred ECCCCHHHHHHHHHHHC
Q ss_conf 05655778878888840
Q gi|254780291|r 349 SNGSEISQWIRDDVFQA 365 (475)
Q Consensus 349 n~~~~iskWL~~DL~~A 365 (475)
++...+.+|+.+-|.+|
T Consensus 263 ~n~~~l~e~l~~lL~~a 279 (321)
T 1w9c_A 263 NNQIFLQEYVANLLKSA 279 (321)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 55999999999999876
No 33
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=21.59 E-value=26 Score=13.90 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=8.9
Q ss_pred EEEEEEEECCCE
Q ss_conf 544334302733
Q gi|254780291|r 297 GSQSYSWNIDNV 308 (475)
Q Consensus 297 GSLSYSWd~gdv 308 (475)
+..+|+|||||-
T Consensus 25 ~~~s~~WdFgDG 36 (80)
T 1b4r_A 25 PVTATRWDFGDG 36 (80)
T ss_dssp SCSEEEEECCSS
T ss_pred CCEEEEEEECCC
T ss_conf 950899992899
No 34
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=21.44 E-value=33 Score=13.19 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=53.9
Q ss_pred EEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 55513310046314688999886116567897605100121267788888672655751302455444788
Q gi|254780291|r 163 AVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGN 233 (475)
Q Consensus 163 ~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDYqNN 233 (475)
..|.|--=+.-..+..+.+-.|++.-++-|-|+||.=+.-|.-=..+-+++..+.++-++- +|||-+.+-
T Consensus 8 LfiGDIvG~~Gr~~v~~~Lp~l~~~~~iDfvIaNgENaa~G~Git~~~~~~l~~~GvDviT-~GNH~wd~k 77 (281)
T 1t71_A 8 IFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYIT-MGNHTWFQK 77 (281)
T ss_dssp EEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEE-CCTTTTCCG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEE-CCCCCCCCH
T ss_conf 9998068888999999980999998289999989853678969899999999971998992-472102563
No 35
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=21.39 E-value=10 Score=16.48 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=22.0
Q ss_pred HCCCC-CCCEEEEEEHHHCCCCCCCEE
Q ss_conf 23333-686089980542022015515
Q gi|254780291|r 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 (475)
Q Consensus 138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (475)
|.||+ .+|.|-.+.|+-|.||-...|
T Consensus 40 lIPH~i~gy~It~~~N~Cl~CH~~~~a 66 (123)
T 1jni_A 40 MVPHSVANYQVTKNVNQCLNCHSPENS 66 (123)
T ss_dssp CCSSCCTTCCEETTEETTHHHHSTTTH
T ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 687335676552688837458687457
No 36
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=20.45 E-value=13 Score=15.81 Aligned_cols=26 Identities=27% Similarity=0.758 Sum_probs=20.7
Q ss_pred HCCCC-CCCEEEEEEHHHCCCCCCCEE
Q ss_conf 23333-686089980542022015515
Q gi|254780291|r 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 (475)
Q Consensus 138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (475)
+.||+ ..|.|-.+.|+-|.||-...|
T Consensus 41 lIPH~iegy~It~~~N~Cl~CH~~~~a 67 (130)
T 1ogy_B 41 VIPHSIEGYQLSVNANRCLECHRRQYS 67 (130)
T ss_dssp CBCSCCTTCCBSSSCBGGGGTSCCCCT
T ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 687247785550789826658796346
Done!