RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] (475 letters) >d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Length = 247 Score = 28.2 bits (62), Expect = 1.4 Identities = 21/152 (13%), Positives = 55/152 (36%), Gaps = 3/152 (1%) Query: 260 QINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFH 319 +++ + + E++ S ++ G +S+S+ G+ D+ ++ Sbjct: 97 KVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDL 156 Query: 320 SVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDI 379 FN +N + + ++ NG + + + + + Sbjct: 157 PDKFNAYLANKWVFITITNDRLSSANLYI-NGVLMGSAEITGLGAIREDNNITLKLDRCN 215 Query: 380 DRF--SSIDQKRMFEKFLTQSKISTIFTTRFT 409 + SID+ R+F K L +I ++T+ + Sbjct: 216 NNNQYVSIDKFRIFCKALNPKEIEKLYTSYLS 247 >d1ogyb_ a.138.1.3 (B:) Periplasmic nitrate reductase subunit NapB {Rhodobacter sphaeroides [TaxId: 1063]} Length = 127 Score = 28.3 bits (63), Expect = 1.4 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH + + V+ N+ L CH + + Sbjct: 40 VIPHSIEGYQLSVNANRCLECHRRQYS 66 >d1jnia_ a.138.1.3 (A:) Periplasmic nitrate reductase subunit NapB {Haemophilus influenzae [TaxId: 727]} Length = 68 Score = 27.4 bits (61), Expect = 2.5 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH N + +VN+ LNCH + Sbjct: 5 MVPHSVANYQVTKNVNQCLNCHSPENS 31 >d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 Score = 27.2 bits (60), Expect = 3.1 Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 282 RNRSWHGETYSISISGSQSYSWNIDNVHFIQ 312 R+R +H +TY G++ W I + Sbjct: 26 RDRKYHLKTYRQCCVGTELVDWMIQQTSCVH 56 >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Score = 27.0 bits (59), Expect = 3.7 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 358 IRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSP 412 + D+V A G++ + D++ S K L + F T Sbjct: 103 LLDNVQYAPARGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATTDPQ 156 >d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 174 Score = 26.7 bits (59), Expect = 4.2 Identities = 9/43 (20%), Positives = 15/43 (34%) Query: 146 DIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEAINSLKSSK 188 DI + + L + AV+ W K M + S + Sbjct: 79 DIYIPNVEGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIIT 121 >d2i9aa2 g.14.1.1 (A:50-132) Urokinase-type plasminogen activator {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Score = 26.2 bits (57), Expect = 5.5 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 6/56 (10%) Query: 274 FNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSN 329 + G+ YR S G WN V + ++ N Sbjct: 2 YEGNGHFYR------GKASTDTMGRPCLPWNSATVLQQTYHAHRSDALQLGLGKHN 51 >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Score = 26.0 bits (56), Expect = 6.1 Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 10/107 (9%) Query: 305 IDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQW------- 357 +D + + + +P + LP + N + Sbjct: 20 VDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL-DYILPELLKNAMRATMESHLDTPY 78 Query: 358 --IRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKIST 402 + A + II +D + D R+ + T ++ ST Sbjct: 79 NVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 125 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0399 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,784,306 Number of extensions: 85425 Number of successful extensions: 259 Number of sequences better than 10.0: 1 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 21 Length of query: 475 Length of database: 2,407,596 Length adjustment: 89 Effective length of query: 386 Effective length of database: 1,185,626 Effective search space: 457651636 Effective search space used: 457651636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)