RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780291|ref|YP_003064704.1| hypothetical protein
CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
         (475 letters)



>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani
           [TaxId: 1513]}
          Length = 247

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 21/152 (13%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 260 QINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFH 319
           +++  + +     E++  S   ++    G  +S+S+ G+       D+   ++       
Sbjct: 97  KVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDL 156

Query: 320 SVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDI 379
              FN   +N +      +        ++ NG  +       +   + +    +      
Sbjct: 157 PDKFNAYLANKWVFITITNDRLSSANLYI-NGVLMGSAEITGLGAIREDNNITLKLDRCN 215

Query: 380 DRF--SSIDQKRMFEKFLTQSKISTIFTTRFT 409
           +     SID+ R+F K L   +I  ++T+  +
Sbjct: 216 NNNQYVSIDKFRIFCKALNPKEIEKLYTSYLS 247


>d1ogyb_ a.138.1.3 (B:) Periplasmic nitrate reductase subunit NapB
           {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 127

 Score = 28.3 bits (63), Expect = 1.4
 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
           ++PH  +   + V+ N+ L CH +  +
Sbjct: 40  VIPHSIEGYQLSVNANRCLECHRRQYS 66


>d1jnia_ a.138.1.3 (A:) Periplasmic nitrate reductase subunit NapB
           {Haemophilus influenzae [TaxId: 727]}
          Length = 68

 Score = 27.4 bits (61), Expect = 2.5
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
           ++PH   N  +  +VN+ LNCH    +
Sbjct: 5   MVPHSVANYQVTKNVNQCLNCHSPENS 31


>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 142

 Score = 27.2 bits (60), Expect = 3.1
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 282 RNRSWHGETYSISISGSQSYSWNIDNVHFIQ 312
           R+R +H +TY     G++   W I     + 
Sbjct: 26  RDRKYHLKTYRQCCVGTELVDWMIQQTSCVH 56


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 27.0 bits (59), Expect = 3.7
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 358 IRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSP 412
           + D+V  A   G++ +   D++   S         K L +      F    T   
Sbjct: 103 LLDNVQYAPARGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATTDPQ 156


>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 174

 Score = 26.7 bits (59), Expect = 4.2
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 146 DIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEAINSLKSSK 188
           DI +   + L    +  AV+   W K    M    + S +   
Sbjct: 79  DIYIPNVEGLKGRLRPYAVLNPGWVKIGLDMNNANVESAEIIT 121


>d2i9aa2 g.14.1.1 (A:50-132) Urokinase-type plasminogen activator
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 26.2 bits (57), Expect = 5.5
 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 6/56 (10%)

Query: 274 FNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSN 329
           + G+   YR         S    G     WN   V     +     ++       N
Sbjct: 2   YEGNGHFYR------GKASTDTMGRPCLPWNSATVLQQTYHAHRSDALQLGLGKHN 51


>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
           dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 193

 Score = 26.0 bits (56), Expect = 6.1
 Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 10/107 (9%)

Query: 305 IDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQW------- 357
           +D    +  +          +         +P  +    LP  + N    +         
Sbjct: 20  VDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPL-DYILPELLKNAMRATMESHLDTPY 78

Query: 358 --IRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKIST 402
                 +  A  +   II  +D     +  D  R+ +   T ++ ST
Sbjct: 79  NVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,784,306
Number of extensions: 85425
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 21
Length of query: 475
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,185,626
Effective search space: 457651636
Effective search space used: 457651636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)