BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] (475 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/475 (100%), Positives = 475/475 (100%) Query: 1 MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH 60 MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH Sbjct: 1 MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH 60 Query: 61 GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY 120 GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY Sbjct: 61 GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY 120 Query: 121 LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA 180 LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA Sbjct: 121 LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA 180 Query: 181 INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY 240 INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY Sbjct: 181 INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY 240 Query: 241 TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS 300 TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS Sbjct: 241 TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS 300 Query: 301 YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD 360 YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD Sbjct: 301 YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD 360 Query: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST 420 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST Sbjct: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST 420 Query: 421 GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR 475 GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR Sbjct: 421 GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR 475 >gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Length = 374 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 9 KTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNHG 61 + F + KG +TILTAI +P+I ++ + ++I + + + + D +L H Sbjct: 9 RNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHA 61 >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%) Query: 22 LTAIIIPLIITLITISTTCANILYHRASIEASADEALNHGIVLLCKDSDL----TPQDIT 77 +TAIII + IT + A+I+Y R ++++ D A+ G + D + T +D T Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 Query: 78 PPVLKDLETSLIKNDFSIKE-AAQIKKESSIN 108 + K +K I+E A I +++ IN Sbjct: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQIN 92 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 31.2 bits (69), Expect = 0.039, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 30/50 (60%) Query: 9 KTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEAL 58 + F + KG+I+ILTAI++P+I ++ + ++ + +A + D +L Sbjct: 7 RNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSL 56 >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 26.6 bits (57), Expect = 0.91, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 411 SPESYIKDS--TGRPVRVYNINKNSKNEFILLEMTPHYINVTAY 452 +PE Y+K +G +V+ +N+N +NE + P + + AY Sbjct: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAY 274 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%) Query: 228 QEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDH 264 +E + PC DPY P I GC DI+++ D+ Sbjct: 303 EEALNREPCPDPY--APLIMGC------DIAEEGGDN 331 >gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter asiaticus str. psy62] Length = 243 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%) Query: 304 NIDNVHF--IQANYSMFHSVYFNDEWSNI-FTVAVPEHISKQDLPSHVSNGSEISQWIRD 360 N D V F I+ +S ND I F + E++SK+ + S +S G+E+ + Sbjct: 28 NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE-VGSFISTGTELDFALEG 86 Query: 361 DVFQAQREGKYIILFADDIDRFSSID 386 D + A + IIL D RF D Sbjct: 87 DAWFALESPRGIILTRD--GRFKVTD 110 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 18/97 (18%) Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRM 390 FT + EH+ + V+ E+SQ R + Q R+G+ + A D+ Sbjct: 260 FTKVLAEHLFQV-----VALSGELSQQERSNALQMMRDGRARVCIATDV----------- 303 Query: 391 FEKFLTQSKISTIFTTRFTSSPESYIKDS--TGRPVR 425 + + + + +S+PE+ + S TGR R Sbjct: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 23.9 bits (50), Expect = 5.9, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 179 EAINSLKSSKNIILGILTGDMTQSSTTKELKR 210 E I + II+ I+TG+M Q+ K L+R Sbjct: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370 >gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter asiaticus str. psy62] Length = 350 Score = 23.5 bits (49), Expect = 8.6, Method: Compositional matrix adjust. Identities = 11/49 (22%), Positives = 23/49 (46%) Query: 378 DIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV 426 +I + ++ ++ + Q++ TI PES + G+P+RV Sbjct: 188 EIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.395 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,360 Number of Sequences: 1233 Number of extensions: 13151 Number of successful extensions: 48 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 11 length of query: 475 length of database: 328,796 effective HSP length: 77 effective length of query: 398 effective length of database: 233,855 effective search space: 93074290 effective search space used: 93074290 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)