HHsearch alignment of GI: 254780292 and MMDB domain: 1j3a_A_

>1j3a_A (A:) 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii}
Probab=100.00  E-value=0  Score=290.73  Aligned_cols=125  Identities=24%  Similarity=0.371  Sum_probs=120.2

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf             99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r   17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG   96 (155)
Q Consensus        17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~   96 (155)
                      |||||+||+||||||.||++|+|            ||+||||||++|.+||+||.++.||+|||||||+++.++++++ +
T Consensus         2 ~viDA~~~~lGRlAs~IAk~L~g------------Gd~VvViNa~~i~~tG~k~~~k~y~~ht~~~gg~~~~~~~~~~-~   68 (142)
T 1j3a_A            2 RIINADGLILGRLASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P   68 (142)
T ss_dssp             EEEECTTBBHHHHHHHHHHHHHT------------TCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred             EEEECCCCCHHHHHHHHHHHHHC------------CCEEEEEECHHEEEECCCHHEEEEEECCCCCCCCCCCCHHHHC-C
T ss_conf             79978998227899999999808------------9969999742418717840201234202345643663067651-4


Q ss_pred             CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCCCCC
Q ss_conf             4879999999973089-985478999627010789997132085476166528131236
Q gi|254780292|r   97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNSRR  154 (155)
Q Consensus        97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn~~~  154 (155)
                      ++|++|+++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++++++++++.++
T Consensus        69 r~P~~ii~~aV~gMLP~k~~~gr~~l~rL~vy~g~~hp~~~~~~~~~~~~~~~~~~~rk  127 (142)
T 1j3a_A           69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRPK  127 (142)
T ss_dssp             CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSSSCC
T ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHCCCC
T ss_conf             48899999998556888985799998388897799997221687016678876304896