HHsearch alignment of GI: 254780292 and MMDB domain: 1j3a_A_
>1j3a_A (A:) 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii}
Probab=100.00 E-value=0 Score=290.73 Aligned_cols=125 Identities=24% Similarity=0.371 Sum_probs=120.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r 17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG 96 (155)
Q Consensus 17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~ 96 (155)
|||||+||+||||||.||++|+| ||+||||||++|.+||+||.++.||+|||||||+++.++++++ +
T Consensus 2 ~viDA~~~~lGRlAs~IAk~L~g------------Gd~VvViNa~~i~~tG~k~~~k~y~~ht~~~gg~~~~~~~~~~-~ 68 (142)
T 1j3a_A 2 RIINADGLILGRLASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P 68 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHHHT------------TCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred EEEECCCCCHHHHHHHHHHHHHC------------CCEEEEEECHHEEEECCCHHEEEEEECCCCCCCCCCCCHHHHC-C
T ss_conf 79978998227899999999808------------9969999742418717840201234202345643663067651-4
Q ss_pred CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCCCCC
Q ss_conf 4879999999973089-985478999627010789997132085476166528131236
Q gi|254780292|r 97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNSRR 154 (155)
Q Consensus 97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn~~~ 154 (155)
++|++|+++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++++++++++.++
T Consensus 69 r~P~~ii~~aV~gMLP~k~~~gr~~l~rL~vy~g~~hp~~~~~~~~~~~~~~~~~~~rk 127 (142)
T 1j3a_A 69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRPK 127 (142)
T ss_dssp CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSSSCC
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHCCCC
T ss_conf 48899999998556888985799998388897799997221687016678876304896