HHsearch alignment of GI: 254780292 and MMDB domain: 1vq8_J_

>1vq8_J (J:) 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00  E-value=1.4e-45  Score=288.71  Aligned_cols=127  Identities=22%  Similarity=0.321  Sum_probs=118.6

Q ss_pred             HHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             43602006999789874576799999998465652103455668889997510100156012113333115755763363
Q gi|254780292|r    9 SSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKT   88 (155)
Q Consensus         9 ~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~   88 (155)
                      +.+++|+||||||+||+||||||.||+.|+            |||+||||||++|++||+||.+|.|++|||||||++..
T Consensus         2 a~~~~r~w~viDA~~~~lGRlAs~iA~~l~------------~Gd~VvVvNa~~i~~tG~k~~~k~y~~ht~~~g~~~~~   69 (145)
T 1vq8_J            2 SVAEFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY   69 (145)
T ss_dssp             --CCCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC
T ss_pred             CHHHCCCEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECHHHCCCCCHHHHHHHHEEEECCCCCCCE
T ss_conf             633427639997999873887999999863------------89879999671312257324421110355136885425


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCCC
Q ss_conf             020000124879999999973089-9854789996270107899971320854761665281312
Q gi|254780292|r   89 TAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNS  152 (155)
Q Consensus        89 ~~~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn~  152 (155)
                      .     +.++|++||++||+|||| ++.+|+.+|+||+||+|++|||++|+|+.+++...++.+.
T Consensus        70 ~-----~~r~P~~ii~~aV~gMLP~k~~~gr~~l~rL~vy~g~~hp~~~~~~~~~~~~~~~~~~~  129 (145)
T 1vq8_J           70 F-----YPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKF  129 (145)
T ss_dssp             C-----CCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSSSCCBCCTTCBCCTTSCCSE
T ss_pred             E-----HHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf             5-----11298899999984516789904789973757807999964456776356641489856