HHsearch alignment of GI: 254780292 and MMDB domain: 2j01_N_1-63_93-140

>2j01_N (N:1-63,N:93-140) 50S ribosomal protein L13; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00  E-value=1.4e-45  Score=289.05  Aligned_cols=111  Identities=43%  Similarity=0.867  Sum_probs=105.8

Q ss_pred             CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r    2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY   81 (155)
Q Consensus         2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy   81 (155)
                      |+||++  ++++|.||+|||++|+|||||+.||.+|+|||||+|||++|||||||||||++|.+|               
T Consensus         1 Mkt~~~--~~~~r~W~iiDA~~q~lGrlA~~ia~~L~GKhKp~y~P~~d~GD~VVViNa~~i~~t---------------   63 (111)
T 2j01_N            1 MKTYVP--KQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVT---------------   63 (111)
T ss_dssp             CCCCCC--CCCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCS---------------
T ss_pred             CCCCCC--CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCEEECCCCCCEEEEEEHHHEEEC---------------
T ss_conf             986575--535530899969999558889999999846431103113578737999500445742---------------


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf             576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r   82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI  144 (155)
Q Consensus        82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~  144 (155)
                                     |.|++|++++|+||||||.+|+++|+||+||+|.+|||++|+++.++|
T Consensus        64 ---------------R~P~~I~~r~VRGMLPK~~~G~~alkrLkvy~G~P~~~~~~~~~~ipi  111 (111)
T 2j01_N           64 ---------------THPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV  111 (111)
T ss_dssp             ---------------SSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC--
T ss_pred             ---------------CCHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf             ---------------486899999999618997569999848789698999855689867169