HHsearch alignment of GI: 254780292 and MMDB domain: 2zkr_j_

>2zkr_j (j:) 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00  E-value=5.9e-44  Score=278.30  Aligned_cols=124  Identities=20%  Similarity=0.297  Sum_probs=117.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             20069997898745767999999984656521034556688899975101001560121133331157557633630200
Q gi|254780292|r   13 EKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKE   92 (155)
Q Consensus        13 ~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~   92 (155)
                      +++||||||+||+||||||.||+.|+            |||+||||||++|.+||++|.++.||+|+|||||++..++++
T Consensus         3 ~r~w~viDA~~~~lGRlAs~iAk~L~------------~G~~VvVvn~e~i~isG~k~~~k~~~~h~~~~g~~~~~~~g~   70 (203)
T 2zkr_j            3 EVQVLVLDGRGHLLGRLAAIVAKQVL------------LGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP   70 (203)
T ss_dssp             ----CEEECTTBBHHHHHHHHHHHHH------------HTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEHHHHEECCCHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf             74499997899805888999999862------------799699988689045560776655530102589887688788


Q ss_pred             CCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCC
Q ss_conf             00124879999999973089-9854789996270107899971320854761665281
Q gi|254780292|r   93 ILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNP  149 (155)
Q Consensus        93 ~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~  149 (155)
                      +. .++|++|+++||+|||| ++.+|+.+|+||+||+|++|||++|+|+.+++.....
T Consensus        71 ~~-~r~P~~I~~raVrgMLP~k~~rg~~~l~rL~vy~g~p~p~~~~k~~~~~~~~~~~  127 (203)
T 2zkr_j           71 YD-FRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVV  127 (203)
T ss_dssp             CC-CCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSS
T ss_pred             HH-CCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECCCHHHHH
T ss_conf             62-5586799999873527899836899984777825899976454332023005765