HHsearch alignment of GI: 254780292 and MMDB domain: 2zkr_j_
>2zkr_j (j:) 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.9e-44 Score=278.30 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=117.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 20069997898745767999999984656521034556688899975101001560121133331157557633630200
Q gi|254780292|r 13 EKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKE 92 (155)
Q Consensus 13 ~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~ 92 (155)
+++||||||+||+||||||.||+.|+ |||+||||||++|.+||++|.++.||+|+|||||++..++++
T Consensus 3 ~r~w~viDA~~~~lGRlAs~iAk~L~------------~G~~VvVvn~e~i~isG~k~~~k~~~~h~~~~g~~~~~~~g~ 70 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQVL------------LGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP 70 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHHH------------HTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEHHHHEECCCHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 74499997899805888999999862------------799699988689045560776655530102589887688788
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCC
Q ss_conf 00124879999999973089-9854789996270107899971320854761665281
Q gi|254780292|r 93 ILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNP 149 (155)
Q Consensus 93 ~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~ 149 (155)
+. .++|++|+++||+|||| ++.+|+.+|+||+||+|++|||++|+|+.+++.....
T Consensus 71 ~~-~r~P~~I~~raVrgMLP~k~~rg~~~l~rL~vy~g~p~p~~~~k~~~~~~~~~~~ 127 (203)
T 2zkr_j 71 YD-FRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVV 127 (203)
T ss_dssp CC-CCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSS
T ss_pred HH-CCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECCCHHHHH
T ss_conf 62-5586799999873527899836899984777825899976454332023005765