HHsearch alignment of GI: 254780292 and MMDB domain: 3f1f_N_
>3f1f_N (N:) 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=0 Score=386.69 Aligned_cols=141 Identities=45% Similarity=0.891 Sum_probs=136.6
Q ss_pred CCEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 95113268436020069997898745767999999984656521034556688899975101001560121133331157
Q gi|254780292|r 1 MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTG 80 (155)
Q Consensus 1 ~~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htg 80 (155)
||+|+++ ++++|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.++.||+|||
T Consensus 23 ~~kt~~~--~~~~r~W~viDA~~~~lGRLAs~IAk~L~GKhKp~y~P~~d~Gd~VIVINa~ki~~tG~k~~~k~y~~htg 100 (163)
T 3f1f_N 23 LVKTYVP--KQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSG 100 (163)
T ss_dssp --CCCCC--CCCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCS
T ss_pred HEEEECC--CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEEEEEC
T ss_conf 1112168--76565379994899936888999999984456464265666698899975822798368431067899824
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 5576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 81 YPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 81 ypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
||||+++.+++++++ ++|++||++||+||||+|++|+.+|+||+||+|++|||++|+|+.+++
T Consensus 101 ~pGg~k~~~~~~~~~-k~P~~ii~~aV~gMLPkn~lgr~~lkrL~vy~g~~hp~~~qkp~~l~i 163 (163)
T 3f1f_N 101 YPGGLKKIPLEKMLA-THPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp STTCBCCEEHHHHHH-SSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred CCCCCCCCCHHHHHC-CCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 799876372566512-388999999998637998669999858879698999855679867169