HHsearch alignment of GI: 254780292 and MMDB domain: 3i1n_J_
>3i1n_J (J:) 50S ribosomal protein L13; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_H 1p86_H 1vs8_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vs6_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J 2qoz_J* ...
Probab=100.00 E-value=0 Score=386.56 Aligned_cols=142 Identities=45% Similarity=0.832 Sum_probs=139.7
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
|+|++++++++.|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.+|.||+||||
T Consensus 1 m~t~~~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~htg~ 80 (142)
T 3i1n_J 1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH 80 (142)
T ss_dssp CCCCCCCTTTCCCCEEEEECSSCBTTHHHHHHHHHHHTTTSSCCCTTSCCCCEEEEECGGGCBCCTTHHHHCCCEEECSS
T ss_pred CCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEECCCCEEEEEEEEEEEC
T ss_conf 97625885671652899969999579999999999864788751002467757999966301213874047898864225
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
|||+++.++.+++ .++|++|+++||+||||+|++|+.+|+||+||+|++|||++|+|+.++|
T Consensus 81 pgg~~~~~~~~~~-~r~P~~i~~~aVrgMLPkn~~g~~~l~rL~iy~g~~hp~~~q~p~~l~~ 142 (142)
T 3i1n_J 81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp TTCEEECCHHHHH-HSCTHHHHHHHHHHHSCSSHHHHHHHTTEECCSSSCCSCGGGCCEECCC
T ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 9975300279998-6678899999997417998559999848789698999844569877269