HHsearch alignment of GI: 254780292 and MMDB domain: 3i1n_J_

>3i1n_J (J:) 50S ribosomal protein L13; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_H 1p86_H 1vs8_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vs6_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J 2qoz_J* ...
Probab=100.00  E-value=0  Score=386.56  Aligned_cols=142  Identities=45%  Similarity=0.832  Sum_probs=139.7

Q ss_pred             CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r    2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY   81 (155)
Q Consensus         2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy   81 (155)
                      |+|++++++++.|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.+|.||+||||
T Consensus         1 m~t~~~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~htg~   80 (142)
T 3i1n_J            1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH   80 (142)
T ss_dssp             CCCCCCCTTTCCCCEEEEECSSCBTTHHHHHHHHHHHTTTSSCCCTTSCCCCEEEEECGGGCBCCTTHHHHCCCEEECSS
T ss_pred             CCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEECCCCEEEEEEEEEEEC
T ss_conf             97625885671652899969999579999999999864788751002467757999966301213874047898864225


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf             576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r   82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI  144 (155)
Q Consensus        82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~  144 (155)
                      |||+++.++.+++ .++|++|+++||+||||+|++|+.+|+||+||+|++|||++|+|+.++|
T Consensus        81 pgg~~~~~~~~~~-~r~P~~i~~~aVrgMLPkn~~g~~~l~rL~iy~g~~hp~~~q~p~~l~~  142 (142)
T 3i1n_J           81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI  142 (142)
T ss_dssp             TTCEEECCHHHHH-HSCTHHHHHHHHHHHSCSSHHHHHHHTTEECCSSSCCSCGGGCCEECCC
T ss_pred             CCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf             9975300279998-6678899999997417998559999848789698999844569877269