HHsearch results for GI: 254780292 and protein with PDBid: 1j3a_A
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.2e-42 Score=269.68 Aligned_cols=122 Identities=25% Similarity=0.385 Sum_probs=115.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r 17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG 96 (155)
Q Consensus 17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~ 96 (155)
-||||+||+||||||.||++|+ |||+||||||+++++||+||..+.||+|+++|||++..+..+++ +
T Consensus 2 ~vIDA~g~~LGRlAs~iAk~L~------------~Gd~VvVvNaekv~~tG~k~~~~~~~~~~~~~~~~~~~~~~~~~-~ 68 (142)
T 1j3a_A 2 RIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P 68 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred EEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHC-C
T ss_conf 7996899832789999999980------------89969999750058837763010214435755532552067652-4
Q ss_pred CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCC
Q ss_conf 4879999999973089-985478999627010789997132085476166528131
Q gi|254780292|r 97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKN 151 (155)
Q Consensus 97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn 151 (155)
++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++.+++++.+
T Consensus 69 ~~P~~il~~aVrgMLP~k~~lgr~~~~rLkvy~G~ph~~~~q~~~~i~~a~~~~~~ 124 (142)
T 1j3a_A 69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLS 124 (142)
T ss_dssp CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSS
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHC
T ss_conf 47599999998546888986799998388897799997221697126678876404