HHsearch results for GI: 254780292 and protein with PDBid: 1j3a_A

>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00  E-value=1.2e-42  Score=269.68  Aligned_cols=122  Identities=25%  Similarity=0.385  Sum_probs=115.4

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf             99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r   17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG   96 (155)
Q Consensus        17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~   96 (155)
                      -||||+||+||||||.||++|+            |||+||||||+++++||+||..+.||+|+++|||++..+..+++ +
T Consensus         2 ~vIDA~g~~LGRlAs~iAk~L~------------~Gd~VvVvNaekv~~tG~k~~~~~~~~~~~~~~~~~~~~~~~~~-~   68 (142)
T 1j3a_A            2 RIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P   68 (142)
T ss_dssp             EEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred             EEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHC-C
T ss_conf             7996899832789999999980------------89969999750058837763010214435755532552067652-4


Q ss_pred             CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCC
Q ss_conf             4879999999973089-985478999627010789997132085476166528131
Q gi|254780292|r   97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKN  151 (155)
Q Consensus        97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn  151 (155)
                      ++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++.+++++.+
T Consensus        69 ~~P~~il~~aVrgMLP~k~~lgr~~~~rLkvy~G~ph~~~~q~~~~i~~a~~~~~~  124 (142)
T 1j3a_A           69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLS  124 (142)
T ss_dssp             CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSS
T ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHC
T ss_conf             47599999998546888986799998388897799997221697126678876404