HHsearch results for GI: 254780292 and protein with PDBid: 2j01_N
>2j01_N 50S ribosomal protein L13; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.21.1.1 PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=0 Score=388.79 Aligned_cols=140 Identities=46% Similarity=0.892 Sum_probs=136.3
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
||||+|+ +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|++||+||.++.||+||||
T Consensus 1 mkt~~p~--~~~r~W~viDA~~~~lGRLAs~vAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~itG~k~~~k~y~~~tg~ 78 (140)
T 2j01_N 1 MKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGY 78 (140)
T ss_dssp CCCCCCC--CCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCCCCS
T ss_pred CCCCCCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECC
T ss_conf 9853766--34541899959999458889999999851330242668777847999656344871688651789998447
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
|||+++.++.++. .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|+|
T Consensus 79 pgg~k~~~~~~~~-~k~P~~il~~aVrgMLPkn~lgr~~lkrLkvy~g~~hp~~aq~p~~l~i 140 (140)
T 2j01_N 79 PGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp SSCCCCCBHHHHH-HSSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC--
T ss_pred CCCCCCCCHHHHH-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 9998647788875-1278999999998747898569999858889698999855679877169