HHsearch results for GI: 254780292 and protein with PDBid: 2zkr_j
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-41 Score=263.24 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=112.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 20069997898745767999999984656521034556688899975101001560121133331157557633630200
Q gi|254780292|r 13 EKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKE 92 (155)
Q Consensus 13 ~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~ 92 (155)
+.+|.||||+|++||||||.||+.| |+||+|||||||+|.+||+++.++.||+|++||||.+..+...
T Consensus 3 e~k~ivIDA~g~iLGRLAS~VAk~L------------l~Gd~VvVVNaeki~isG~k~~~k~~y~~~~~~~~~~~~~~g~ 70 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQV------------LLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP 70 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHH------------HHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH------------CCCCEEEEEECHHEEECCCHHHHHHHHEEEECCCCCCCCCHHH
T ss_conf 7449999689980488899999986------------4899699996035487275476653430010588886787677
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHH
Q ss_conf 00124879999999973089-985478999627010789997132085476166
Q gi|254780292|r 93 ILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIA 145 (155)
Q Consensus 93 ~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~ 145 (155)
+ +.++|++|+++||+|||| +|++|+.+|+||+||+|.+|||++|+|+.+.-+
T Consensus 71 ~-~~r~P~~Il~raVrGMLP~K~~~Gr~alkrLkvy~G~p~p~~~~k~~vvp~a 123 (203)
T 2zkr_j 71 Y-DFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAA 123 (203)
T ss_dssp C-CCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGB
T ss_pred H-HHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECCHH
T ss_conf 5-3037779999998533778985599998488796689997556765536337