HHsearch results for GI: 254780292 and protein with PDBid: 2zkr_j

>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00  E-value=1.5e-41  Score=263.24  Aligned_cols=120  Identities=21%  Similarity=0.333  Sum_probs=112.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             20069997898745767999999984656521034556688899975101001560121133331157557633630200
Q gi|254780292|r   13 EKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKE   92 (155)
Q Consensus        13 ~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~   92 (155)
                      +.+|.||||+|++||||||.||+.|            |+||+|||||||+|.+||+++.++.||+|++||||.+..+...
T Consensus         3 e~k~ivIDA~g~iLGRLAS~VAk~L------------l~Gd~VvVVNaeki~isG~k~~~k~~y~~~~~~~~~~~~~~g~   70 (203)
T 2zkr_j            3 EVQVLVLDGRGHLLGRLAAIVAKQV------------LLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP   70 (203)
T ss_dssp             ----CEEECTTBBHHHHHHHHHHHH------------HHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHH------------CCCCEEEEEECHHEEECCCHHHHHHHHEEEECCCCCCCCCHHH
T ss_conf             7449999689980488899999986------------4899699996035487275476653430010588886787677


Q ss_pred             CCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHH
Q ss_conf             00124879999999973089-985478999627010789997132085476166
Q gi|254780292|r   93 ILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIA  145 (155)
Q Consensus        93 ~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~  145 (155)
                      + +.++|++|+++||+|||| +|++|+.+|+||+||+|.+|||++|+|+.+.-+
T Consensus        71 ~-~~r~P~~Il~raVrGMLP~K~~~Gr~alkrLkvy~G~p~p~~~~k~~vvp~a  123 (203)
T 2zkr_j           71 Y-DFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAA  123 (203)
T ss_dssp             C-CCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGB
T ss_pred             H-HHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECCHH
T ss_conf             5-3037779999998533778985599998488796689997556765536337