HHsearch results for GI: 254780292 and protein with PDBid: 3f1f_N
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=0 Score=390.42 Aligned_cols=141 Identities=45% Similarity=0.894 Sum_probs=136.9
Q ss_pred CCEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 95113268436020069997898745767999999984656521034556688899975101001560121133331157
Q gi|254780292|r 1 MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTG 80 (155)
Q Consensus 1 ~~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htg 80 (155)
+||||+|+ +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|.+||+||.++.||+|||
T Consensus 23 ~~kt~~p~--~~~r~W~vIDA~~~~LGRLAS~IAk~L~GKhkp~y~p~~d~Gd~VvViNa~ki~itG~K~~~k~y~~~tg 100 (163)
T 3f1f_N 23 LVKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSG 100 (163)
T ss_dssp --CCCCCC--CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCS
T ss_pred HHCCCCCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEC
T ss_conf 41110776--5554089994899945888999999984345343155666773799943527798468541267899824
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 5576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 81 YPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 81 ypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
||||+++.++.++. +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|++
T Consensus 101 ~pGg~k~~~~~~~~-~r~P~~ii~raVrGMLPkn~lgr~~lkrLkvy~G~~hph~aQ~P~~l~i 163 (163)
T 3f1f_N 101 YPGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp STTCBCCEEHHHHH-HSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred CCCCCCCCCHHHHC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 79988646524431-3488999999998658898469999848589698999845689877279