HHsearch results for GI: 254780292 and protein with PDBid: 3f1f_N

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00  E-value=0  Score=390.42  Aligned_cols=141  Identities=45%  Similarity=0.894  Sum_probs=136.9

Q ss_pred             CCEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             95113268436020069997898745767999999984656521034556688899975101001560121133331157
Q gi|254780292|r    1 MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTG   80 (155)
Q Consensus         1 ~~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htg   80 (155)
                      +||||+|+  +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|.+||+||.++.||+|||
T Consensus        23 ~~kt~~p~--~~~r~W~vIDA~~~~LGRLAS~IAk~L~GKhkp~y~p~~d~Gd~VvViNa~ki~itG~K~~~k~y~~~tg  100 (163)
T 3f1f_N           23 LVKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSG  100 (163)
T ss_dssp             --CCCCCC--CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCS
T ss_pred             HHCCCCCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEC
T ss_conf             41110776--5554089994899945888999999984345343155666773799943527798468541267899824


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf             5576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r   81 YPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI  144 (155)
Q Consensus        81 ypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~  144 (155)
                      ||||+++.++.++. +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|++
T Consensus       101 ~pGg~k~~~~~~~~-~r~P~~ii~raVrGMLPkn~lgr~~lkrLkvy~G~~hph~aQ~P~~l~i  163 (163)
T 3f1f_N          101 YPGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV  163 (163)
T ss_dssp             STTCBCCEEHHHHH-HSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred             CCCCCCCCCHHHHC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf             79988646524431-3488999999998658898469999848589698999845689877279