HHsearch results for GI: 254780292 and protein with PDBid: 3jyw_M

>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M
Probab=100.00  E-value=6.9e-43  Score=271.13  Aligned_cols=116  Identities=25%  Similarity=0.404  Sum_probs=109.6

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf             99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r   17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG   96 (155)
Q Consensus        17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~   96 (155)
                      .||||+|++||||||.||++|+            +||+|||||||+|.+||+||.+|.||+|||||||++..++..++ +
T Consensus         1 IVIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNAeki~iTG~K~~~k~yy~~~g~~gg~k~~~~g~~~-~   67 (178)
T 3jyw_M            1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFH-F   67 (178)
T ss_dssp             CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCC-C
T ss_pred             CEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHH-C
T ss_conf             9895899966888999999972------------89979999711079747401468999842015664685778873-4


Q ss_pred             CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHH
Q ss_conf             4879999999973089-985478999627010789997132085476166
Q gi|254780292|r   97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIA  145 (155)
Q Consensus        97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~  145 (155)
                      ++|++||+++|+|||| ||++|+.+|+||+||+|.+|||++|+|+.++-.
T Consensus        68 r~P~~Il~rAVrGMLP~K~~~Gr~alkrLkVY~G~php~~~qk~~~i~~A  117 (178)
T 3jyw_M           68 RAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQA  117 (178)
T ss_dssp             SSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSS
T ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHCCCCEECCHH
T ss_conf             37589999998456899993699998387897899997211788726447