HHsearch results for GI: 254780292 and protein with PDBid: 3ofq_J
>3ofq_J 50S ribosomal protein L13; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=0 Score=402.58 Aligned_cols=142 Identities=45% Similarity=0.832 Sum_probs=139.4
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
|+||++++++++|+||+|||+||+||||||.||++|+|||||+|+|++||||+||||||++|++||+||.+|.||+||||
T Consensus 1 Mkt~~~k~~~~~r~W~liDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~K~~~k~y~~hsgy 80 (142)
T 3ofq_J 1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH 80 (142)
T ss_dssp CCCCCCCSSSCCCCEEECCCSSSCSSHHHHHHHHHHTTTTSSCCCTTSCCCCEEECCBGGGCCCCSSCTTTCCCCEECSS
T ss_pred CCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECHHEEECCCCHHCEEEEEEEEC
T ss_conf 97505884452664799968999468889999999843788630103578867999831465861861120466784105
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
|||+++.++.+++ +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.||+
T Consensus 81 pGg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lgr~~~krLkvy~g~~hp~~aq~P~~l~i 142 (142)
T 3ofq_J 81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp SSCEECCCHHHHS-SSCGGGHHHHTTTTTSCCSTTHHHHHTTEECCBSSCCSCGGGCCCCCCC
T ss_pred CCCCCCCCHHHHH-HHCHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 9998678989998-5287899999998817998359999848889698999965679877169