Query gi|254780292|ref|YP_003064705.1| 50S ribosomal protein L13 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 111 out of 1699
Neff 4.9
Searched_HMMs 23785
Date Mon May 30 08:05:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780292.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ofq_J 50S ribosomal protein L 100.0 0 0 402.6 6.4 142 2-144 1-142 (142)
2 3f1f_N 50S ribosomal protein L 100.0 0 0 390.4 7.7 141 1-144 23-163 (163)
3 3bbo_L Ribosomal protein L13; 100.0 0 0 392.8 5.2 150 2-152 97-249 (250)
4 2j01_N 50S ribosomal protein L 100.0 0 0 388.8 6.9 140 2-144 1-140 (140)
5 2zjr_G 50S ribosomal protein L 100.0 0 0 383.3 11.3 147 1-150 28-174 (174)
6 2ftc_H L13MT, MRP-L13, 39S rib 100.0 0 0 377.5 10.1 144 2-146 1-147 (148)
7 1j3a_A 50S ribosomal protein L 100.0 1.2E-42 0 269.7 9.5 122 17-151 2-124 (142)
8 3jyw_M 60S ribosomal protein L 100.0 6.9E-43 0 271.1 4.2 116 17-145 1-117 (178)
9 1vq8_J 50S ribosomal protein L 100.0 1E-41 0 264.2 8.5 123 10-150 4-127 (145)
10 2zkr_j 60S ribosomal protein L 100.0 1.5E-41 0 263.2 7.5 120 13-145 3-123 (203)
11 3czq_A Putative polyphosphate 26.7 27 0.0011 15.8 2.0 20 12-31 249-268 (304)
12 2cvb_A Probable thiol-disulfid 23.8 40 0.0017 14.8 2.5 18 9-26 28-47 (188)
13 2bgw_A XPF endonuclease; hydro 23.0 40 0.0017 14.8 2.3 39 14-57 8-46 (219)
14 2ziu_A MUS81 protein; helix-ha 22.8 42 0.0017 14.7 2.6 46 17-62 22-69 (311)
15 1tul_A TLP20; telokin-like pro 21.5 32 0.0013 15.4 1.5 15 48-62 63-77 (108)
16 3czp_A Putative polyphosphate 21.4 36 0.0015 15.0 1.8 21 11-31 205-225 (500)
No 1
>3ofq_J 50S ribosomal protein L13; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=0 Score=402.58 Aligned_cols=142 Identities=45% Similarity=0.832 Sum_probs=139.4
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
|+||++++++++|+||+|||+||+||||||.||++|+|||||+|+|++||||+||||||++|++||+||.+|.||+||||
T Consensus 1 Mkt~~~k~~~~~r~W~liDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~K~~~k~y~~hsgy 80 (142)
T 3ofq_J 1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH 80 (142)
T ss_dssp CCCCCCCSSSCCCCEEECCCSSSCSSHHHHHHHHHHTTTTSSCCCTTSCCCCEEECCBGGGCCCCSSCTTTCCCCEECSS
T ss_pred CCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECHHEEECCCCHHCEEEEEEEEC
T ss_conf 97505884452664799968999468889999999843788630103578867999831465861861120466784105
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
|||+++.++.+++ +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.||+
T Consensus 81 pGg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lgr~~~krLkvy~g~~hp~~aq~P~~l~i 142 (142)
T 3ofq_J 81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI 142 (142)
T ss_dssp SSCEECCCHHHHS-SSCGGGHHHHTTTTTSCCSTTHHHHHTTEECCBSSCCSCGGGCCCCCCC
T ss_pred CCCCCCCCHHHHH-HHCHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 9998678989998-5287899999998817998359999848889698999965679877169
No 2
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=0 Score=390.42 Aligned_cols=141 Identities=45% Similarity=0.894 Sum_probs=136.9
Q ss_pred CCEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 95113268436020069997898745767999999984656521034556688899975101001560121133331157
Q gi|254780292|r 1 MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTG 80 (155)
Q Consensus 1 ~~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htg 80 (155)
+||||+|+ +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|.+||+||.++.||+|||
T Consensus 23 ~~kt~~p~--~~~r~W~vIDA~~~~LGRLAS~IAk~L~GKhkp~y~p~~d~Gd~VvViNa~ki~itG~K~~~k~y~~~tg 100 (163)
T 3f1f_N 23 LVKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSG 100 (163)
T ss_dssp --CCCCCC--CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCS
T ss_pred HHCCCCCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCEEEEEEEC
T ss_conf 41110776--5554089994899945888999999984345343155666773799943527798468541267899824
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 5576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 81 YPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 81 ypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
||||+++.++.++. +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|++
T Consensus 101 ~pGg~k~~~~~~~~-~r~P~~ii~raVrGMLPkn~lgr~~lkrLkvy~G~~hph~aQ~P~~l~i 163 (163)
T 3f1f_N 101 YPGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp STTCBCCEEHHHHH-HSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred CCCCCCCCCHHHHC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 79988646524431-3488999999998658898469999848589698999845689877279
No 3
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=0 Score=392.81 Aligned_cols=150 Identities=43% Similarity=0.758 Sum_probs=145.1
Q ss_pred CEEEECCHHH---CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC
Q ss_conf 5113268436---0200699978987457679999999846565210345566888999751010015601211333311
Q gi|254780292|r 2 IPTFFQKSSE---VEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRH 78 (155)
Q Consensus 2 ~kT~~~k~~~---~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~h 78 (155)
|+||+||.++ ++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|++||+||.+|.|++|
T Consensus 97 n~T~~pk~ad~~~~~K~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~YtP~~D~GD~VVVINAekIviTG~K~~~K~Y~~h 176 (250)
T 3bbo_L 97 NTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRH 176 (250)
T ss_dssp ---------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEEEE
T ss_conf 65514775667665764899959999448889999999806886763667776878999558046863750233568996
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCCC
Q ss_conf 57557633630200001248799999999730899854789996270107899971320854761665281312
Q gi|254780292|r 79 TGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNS 152 (155)
Q Consensus 79 tgypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn~ 152 (155)
||||||+++.++.+++ +++|++||++||+||||||++|+.+|+||+||+|++|||+||+|+.+++++.+.++.
T Consensus 177 sGypGG~k~~~~~~l~-~R~P~~IlkrAVrGMLPKn~lGR~alKRLkVY~G~~HPheaQkP~~l~~~~~~~r~k 249 (250)
T 3bbo_L 177 SGRPGGLKEETFDQLQ-KRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVE 249 (250)
T ss_dssp CSSSSCCCBCCHHHHT-TSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC-------------
T ss_pred ECCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCHHHCCCEECCHHHHHHHCC
T ss_conf 0447887664444123-568899999999761899834999984888969999982104982525566444204
No 4
>2j01_N 50S ribosomal protein L13; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.21.1.1 PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=0 Score=388.79 Aligned_cols=140 Identities=46% Similarity=0.892 Sum_probs=136.3
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
||||+|+ +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||++|++||+||.++.||+||||
T Consensus 1 mkt~~p~--~~~r~W~viDA~~~~lGRLAs~vAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~itG~k~~~k~y~~~tg~ 78 (140)
T 2j01_N 1 MKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGY 78 (140)
T ss_dssp CCCCCCC--CCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCCCCS
T ss_pred CCCCCCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECC
T ss_conf 9853766--34541899959999458889999999851330242668777847999656344871688651789998447
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEH
Q ss_conf 576336302000012487999999997308998547899962701078999713208547616
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~ 144 (155)
|||+++.++.++. .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|+|
T Consensus 79 pgg~k~~~~~~~~-~k~P~~il~~aVrgMLPkn~lgr~~lkrLkvy~g~~hp~~aq~p~~l~i 140 (140)
T 2j01_N 79 PGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp SSCCCCCBHHHHH-HSSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC--
T ss_pred CCCCCCCCHHHHH-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEECC
T ss_conf 9998647788875-1278999999998747898569999858889698999855679877169
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=0 Score=383.31 Aligned_cols=147 Identities=44% Similarity=0.792 Sum_probs=142.0
Q ss_pred CCEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 95113268436020069997898745767999999984656521034556688899975101001560121133331157
Q gi|254780292|r 1 MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTG 80 (155)
Q Consensus 1 ~~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htg 80 (155)
.||||+|+ +++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||+++.+||+||.+|.|++|||
T Consensus 28 ~~kt~~pk--~~~r~W~vIDA~g~~LGRLAS~VAk~L~GK~Kp~y~p~~d~GD~ViViNa~ki~~tG~k~~~K~y~~htg 105 (174)
T 2zjr_G 28 KVKTYIPK--NDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTG 105 (174)
T ss_dssp --CCCCCC--CSCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCS
T ss_pred EEEEECCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEECCEEEEECCCCEEEEEEEEEEC
T ss_conf 45785478--7766689996999946888999999984588750556856676699961417898265200036888703
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCC
Q ss_conf 5576336302000012487999999997308998547899962701078999713208547616652813
Q gi|254780292|r 81 YPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPK 150 (155)
Q Consensus 81 ypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~k 150 (155)
||||++++++.+++ +++|++||++||+||||+|++|+.+|+||+||+|++|||++|+|+.|+++.+|.|
T Consensus 106 ~pGg~k~~~~~~~~-~r~P~~Il~rAVrGMLPKn~lgr~~lkrLkVy~G~~HPh~aq~P~~l~~~~~~~k 174 (174)
T 2zjr_G 106 YQGGLKTETAREAL-SKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPLEVK 174 (174)
T ss_dssp SCSSCCEEEESTTT-TSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCCC---
T ss_pred CCCCCCCCCCCHHH-HCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCEECCCCCCCC
T ss_conf 36886434321434-2173678999998718998659999848878589999932139836424357779
No 6
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00 E-value=0 Score=377.45 Aligned_cols=144 Identities=37% Similarity=0.676 Sum_probs=139.1
Q ss_pred CEEEECCHH---HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC
Q ss_conf 511326843---60200699978987457679999999846565210345566888999751010015601211333311
Q gi|254780292|r 2 IPTFFQKSS---EVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRH 78 (155)
Q Consensus 2 ~kT~~~k~~---~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~h 78 (155)
|+||+.++. +++|+||||||+|++||||||.||++|+|||||+|+|++||||+||||||++|++||+||.+|.|++|
T Consensus 1 m~~~~~~~q~~~~~~r~W~viDA~~~~lGRLAs~VAk~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHEEEEEE
T ss_conf 97634575533321417999948999268889999999835876535546567868999735128972621220466775
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHH
Q ss_conf 57557633630200001248799999999730899854789996270107899971320854761665
Q gi|254780292|r 79 TGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAK 146 (155)
Q Consensus 79 tgypGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~ 146 (155)
||||||+++.+++++. .++|++||++||+||||+|++|+.+|+||+||+|++|||++|+|+.+++.+
T Consensus 81 tg~pgg~k~~~~~~~~-~r~P~~il~raVrgMLPkn~~gr~~lkrLkvy~g~~hP~~~q~p~~~~i~q 147 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLH-LRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQ 147 (148)
T ss_pred EEECCCCCCCCCCHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHCCEECCCCCCCHHHHCCCCCCCCC
T ss_conf 3216862124520001-357689999999984899811999985857768999986774855346799
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.2e-42 Score=269.68 Aligned_cols=122 Identities=25% Similarity=0.385 Sum_probs=115.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r 17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG 96 (155)
Q Consensus 17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~ 96 (155)
-||||+||+||||||.||++|+ |||+||||||+++++||+||..+.||+|+++|||++..+..+++ +
T Consensus 2 ~vIDA~g~~LGRlAs~iAk~L~------------~Gd~VvVvNaekv~~tG~k~~~~~~~~~~~~~~~~~~~~~~~~~-~ 68 (142)
T 1j3a_A 2 RIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P 68 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred EEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHC-C
T ss_conf 7996899832789999999980------------89969999750058837763010214435755532552067652-4
Q ss_pred CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCC
Q ss_conf 4879999999973089-985478999627010789997132085476166528131
Q gi|254780292|r 97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKN 151 (155)
Q Consensus 97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn 151 (155)
++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++.+++++.+
T Consensus 69 ~~P~~il~~aVrgMLP~k~~lgr~~~~rLkvy~G~ph~~~~q~~~~i~~a~~~~~~ 124 (142)
T 1j3a_A 69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLS 124 (142)
T ss_dssp CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSS
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHC
T ss_conf 47599999998546888986799998388897799997221697126678876404
No 8
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M
Probab=100.00 E-value=6.9e-43 Score=271.13 Aligned_cols=116 Identities=25% Similarity=0.404 Sum_probs=109.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r 17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG 96 (155)
Q Consensus 17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~ 96 (155)
.||||+|++||||||.||++|+ +||+|||||||+|.+||+||.+|.||+|||||||++..++..++ +
T Consensus 1 IVIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNAeki~iTG~K~~~k~yy~~~g~~gg~k~~~~g~~~-~ 67 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFH-F 67 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCC-C
T ss_pred CEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHH-C
T ss_conf 9895899966888999999972------------89979999711079747401468999842015664685778873-4
Q ss_pred CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHH
Q ss_conf 4879999999973089-985478999627010789997132085476166
Q gi|254780292|r 97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIA 145 (155)
Q Consensus 97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~ 145 (155)
++|++||+++|+|||| ||++|+.+|+||+||+|.+|||++|+|+.++-.
T Consensus 68 r~P~~Il~rAVrGMLP~K~~~Gr~alkrLkVY~G~php~~~qk~~~i~~A 117 (178)
T 3jyw_M 68 RAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQA 117 (178)
T ss_dssp SSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSS
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHCCCCEECCHH
T ss_conf 37589999998456899993699998387897899997211788726447
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1e-41 Score=264.22 Aligned_cols=123 Identities=23% Similarity=0.379 Sum_probs=111.4
Q ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 36020069997898745767999999984656521034556688899975101001560121133331157557633630
Q gi|254780292|r 10 SEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTT 89 (155)
Q Consensus 10 ~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~ 89 (155)
++++ +|.||||+|++||||||.||+.|. +||+||||||+++.+||+||.++.||+|+|||||.+..
T Consensus 4 ~~~~-k~ivIDA~~~~lGRLAs~vAk~ll------------~Gd~ViVvNaeki~itG~k~~~k~~y~~~~~~g~~kg~- 69 (145)
T 1vq8_J 4 AEFD-ADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY- 69 (145)
T ss_dssp CCCC-CSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC-
T ss_pred HHCC-CEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEHHHHEECCCHHHHHHEEEEECCCCCCCCE-
T ss_conf 4537-619997999845888999989854------------89979999848924048616520102464357986632-
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCC
Q ss_conf 20000124879999999973089-98547899962701078999713208547616652813
Q gi|254780292|r 90 AKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPK 150 (155)
Q Consensus 90 ~~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~k 150 (155)
+++++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+..++..+...
T Consensus 70 ----~~~r~P~~il~raVrGMLP~k~~~Gr~~lkrLkvy~G~~h~~~~q~~~~~~l~~~~~~ 127 (145)
T 1vq8_J 70 ----FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNI 127 (145)
T ss_dssp ----CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSSSCCBCCTTCBCCTTSCC
T ss_pred ----EHHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCC
T ss_conf ----0211889999999841589998068999838789779998723466776677525898
No 10
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-41 Score=263.24 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=112.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 20069997898745767999999984656521034556688899975101001560121133331157557633630200
Q gi|254780292|r 13 EKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKE 92 (155)
Q Consensus 13 ~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~ 92 (155)
+.+|.||||+|++||||||.||+.| |+||+|||||||+|.+||+++.++.||+|++||||.+..+...
T Consensus 3 e~k~ivIDA~g~iLGRLAS~VAk~L------------l~Gd~VvVVNaeki~isG~k~~~k~~y~~~~~~~~~~~~~~g~ 70 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQV------------LLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGP 70 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHH------------HHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH------------CCCCEEEEEECHHEEECCCHHHHHHHHEEEECCCCCCCCCHHH
T ss_conf 7449999689980488899999986------------4899699996035487275476653430010588886787677
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHH
Q ss_conf 00124879999999973089-985478999627010789997132085476166
Q gi|254780292|r 93 ILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIA 145 (155)
Q Consensus 93 ~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~ 145 (155)
+ +.++|++|+++||+|||| +|++|+.+|+||+||+|.+|||++|+|+.+.-+
T Consensus 71 ~-~~r~P~~Il~raVrGMLP~K~~~Gr~alkrLkvy~G~p~p~~~~k~~vvp~a 123 (203)
T 2zkr_j 71 Y-DFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAA 123 (203)
T ss_dssp C-CCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGB
T ss_pred H-HHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECCHH
T ss_conf 5-3037779999998533778985599998488796689997556765536337
No 11
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, protein structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti 1021}
Probab=26.69 E-value=27 Score=15.78 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=14.0
Q ss_pred CCEEEEEEECCCCCHHHHHH
Q ss_conf 02006999789874576799
Q gi|254780292|r 12 VEKKWILVDAKGLIVGRLAS 31 (155)
Q Consensus 12 ~~r~W~iiDA~~~~lGRlAs 31 (155)
-.--||||+|.++-..||..
T Consensus 249 ~~APW~VI~a~dK~~arl~v 268 (304)
T 3czq_A 249 EHGPWAVIRGNDKRRSRINV 268 (304)
T ss_dssp SSSCEEEEECSSHHHHHHHH
T ss_pred CCCCEEEECCCCCHHHHHHH
T ss_conf 99993897288808999999
No 12
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus HB8} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=23.79 E-value=40 Score=14.79 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=11.1
Q ss_pred HHHCCEEEEEEE--CCCCCH
Q ss_conf 436020069997--898745
Q gi|254780292|r 9 SSEVEKKWILVD--AKGLIV 26 (155)
Q Consensus 9 ~~~~~r~W~iiD--A~~~~l 26 (155)
.++++-++.||+ |.+...
T Consensus 28 Lsd~~gk~vvl~FwatwCp~ 47 (188)
T 2cvb_A 28 LSQFHEPLLAVVFMCNHCPY 47 (188)
T ss_dssp GGGCCSSEEEEEEECSSCHH
T ss_pred HHHHCCCEEEEEEECCCCCC
T ss_conf 89969995999998989974
No 13
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=22.97 E-value=40 Score=14.79 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 00699978987457679999999846565210345566888999
Q gi|254780292|r 14 KKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVI 57 (155)
Q Consensus 14 r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvV 57 (155)
+.-.|||.+.. .+.+..+|..+.-..-.-..++|||++.
T Consensus 8 ~~~iviD~RE~-----~s~~~~~l~~~gi~~~~~~L~~GD~~i~ 46 (219)
T 2bgw_A 8 RPRVYVDVREE-----RSPVPSILESLGVQVIPKQLPMGDYLVS 46 (219)
T ss_dssp SCEEEEETTTT-----TSSHHHHHHHTTCEEEEECCSSSSEEEE
T ss_pred CCEEEEECCCC-----CCHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 97799989998-----7366899997899799976797899987
No 14
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=22.81 E-value=42 Score=14.68 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=32.8
Q ss_pred EEEECCCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 999789874576--7999999984656521034556688899975101
Q gi|254780292|r 17 ILVDAKGLIVGR--LASQIALRLRGKNKPTYTPSADDGDHVVIINASK 62 (155)
Q Consensus 17 ~iiDA~~~~lGR--lAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~k 62 (155)
.|||-+....++ ..+.+...|....-..-.-..++||++++.+++.
T Consensus 22 lvvD~RE~~~~~~~~~~~l~~~l~~~gi~~~~~~L~vGD~i~~~~~~~ 69 (311)
T 2ziu_A 22 LCVDLCETTGGSSVRKQELVKELQRNSVTFDVRKLNVGDFLWVARERV 69 (311)
T ss_dssp EEECGGGSCC-----CCHHHHHHHTTTCCEECCCCSSCSEEEEEEECC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCC
T ss_conf 999888876665413899999999789948999888688899941565
No 15
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californicanucleopolyhedrovirus} SCOP: b.85.5.1
Probab=21.48 E-value=32 Score=15.36 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=11.6
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 556688899975101
Q gi|254780292|r 48 SADDGDHVVIINASK 62 (155)
Q Consensus 48 ~~d~GD~VvViNa~k 62 (155)
-+-||||+|+-|.-+
T Consensus 63 ~v~cGdY~V~~N~~~ 77 (108)
T 1tul_A 63 TVSCGNYGVLCNLVQ 77 (108)
T ss_dssp EEESSSEEEEEECCS
T ss_pred EEEECCEEEEEECCC
T ss_conf 999388899997113
No 16
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural genomics, protein structure initiative; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=21.41 E-value=36 Score=15.05 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.2
Q ss_pred HCCEEEEEEECCCCCHHHHHH
Q ss_conf 602006999789874576799
Q gi|254780292|r 11 EVEKKWILVDAKGLIVGRLAS 31 (155)
Q Consensus 11 ~~~r~W~iiDA~~~~lGRlAs 31 (155)
+-.--||||||.++-..|+..
T Consensus 205 t~~APW~vI~addk~~a~l~v 225 (500)
T 3czp_A 205 RDYAPWYVVEGADERYRALTV 225 (500)
T ss_dssp BTTBCEEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHH
T ss_conf 999981898078889999999
Done!