HHSEARCH alignment of GI: 254780292 and SCOP domain: d1vqoj1

Alignment
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=1.7e-42  Score=267.49  Aligned_cols=121  Identities=23%  Similarity=0.388  Sum_probs=110.0

Q ss_pred             HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             60200699978987457679999999846565210345566888999751010015601211333311575576336302
Q gi|254780292|r   11 EVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTA   90 (155)
Q Consensus        11 ~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~   90 (155)
                      +++ +|.||||+|++||||||.||+.|+            +||+||||||++|.+||+||.++.||+|++||||.+..  
T Consensus         2 ~~~-k~ivIDA~~~~lGRLAs~vAk~l~------------~Gd~ViVvNaeki~itG~k~~~k~~y~~~~~~g~~kg~--   66 (142)
T d1vqoj1           2 EFD-ADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY--   66 (142)
T ss_dssp             CCC-CSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC--
T ss_pred             CCC-CEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECHHHCCCCCCHHHHHEEEEEECCCCCCCE--
T ss_conf             866-339997999855888999999863------------89879999771420247512200003566337885435--


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCC
Q ss_conf             0000124879999999973089-9854789996270107899971320854761665281
Q gi|254780292|r   91 KEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNP  149 (155)
Q Consensus        91 ~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~  149 (155)
                         +.+++|++||++||+|||| ++.+|+.+|+||+||.|++|||++|+|+...+..+..
T Consensus        67 ---~~~r~P~~il~raVrGMLP~k~~~gr~~~krLkvy~G~~h~~~~q~~~~~~~~~~~~  123 (142)
T d1vqoj1          67 ---FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSN  123 (142)
T ss_dssp             ---CCCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCSSSCCBCCTTCBCCTTTC
T ss_pred             ---EHHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCC
T ss_conf             ---501288899999981747889904788972758948999964457677456522489


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Archaeon Haloarcula marismortui [TaxId: 2238]