HHSEARCH alignment of GI: 254780292 and SCOP domain: d2j01n1

Alignment
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=388.83  Aligned_cols=139  Identities=46%  Similarity=0.891  Sum_probs=135.3

Q ss_pred             CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r    2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY   81 (155)
Q Consensus         2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy   81 (155)
                      ||||+|+  +++|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.++.|++||||
T Consensus         1 mkt~~p~--~~~r~W~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~hsgy   78 (139)
T d2j01n1           1 MKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGY   78 (139)
T ss_dssp             CCCCCCC--CCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCCCCS
T ss_pred             CCCCCCC--CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCCEEEEECHHHEEEECCCCCEEEEEEECCC
T ss_conf             9865755--35521899969999558889999999854440014032478746999343685650653011245542133


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEE
Q ss_conf             57633630200001248799999999730899854789996270107899971320854761
Q gi|254780292|r   82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMD  143 (155)
Q Consensus        82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~  143 (155)
                      |||+++.+++++. .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.||
T Consensus        79 pGg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lg~~~l~rLkvy~g~~hp~~aq~p~~l~  139 (139)
T d2j01n1          79 PGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLE  139 (139)
T ss_dssp             SSCCCCCBHHHHH-HSSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC-
T ss_pred             CCCCCCCCHHHHC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECC
T ss_conf             6864533377741-447789999999854889765999985887969899985568987088


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Thermus thermophilus [TaxId: 274]