HHSEARCH alignment of GI: 254780292 and SCOP domain: d2zjrg1

Alignment
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=385.90  Aligned_cols=142  Identities=45%  Similarity=0.811  Sum_probs=137.1

Q ss_pred             EEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             11326843602006999789874576799999998465652103455668889997510100156012113333115755
Q gi|254780292|r    3 PTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYP   82 (155)
Q Consensus         3 kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgyp   82 (155)
                      |||+++.  ++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||+++.+||+||.+|+|++|||||
T Consensus         1 kt~~~k~--~~r~W~viDA~~~~lGRlAs~iAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~~tG~K~~~k~y~~htg~p   78 (142)
T d2zjrg1           1 KTYIPKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQ   78 (142)
T ss_dssp             CCCCCCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSC
T ss_pred             CCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECCCCEEEECCCCHHHHEEHHHCCCC
T ss_conf             9627877--77658999799995688999999998557665255235678779974873358727535531000110344


Q ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHC
Q ss_conf             76336302000012487999999997308998547899962701078999713208547616652
Q gi|254780292|r   83 GGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKM  147 (155)
Q Consensus        83 GG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~  147 (155)
                      ||+++.++.+++ +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|+++++
T Consensus        79 gg~k~~~~~~~~-~r~P~~ii~~aV~gMLPkn~lgr~~lkrLkvy~G~~hp~~~q~P~~l~~~~l  142 (142)
T d2zjrg1          79 GGLKTETAREAL-SKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL  142 (142)
T ss_dssp             SSCCEEEESTTT-TSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCCC
T ss_pred             CCCCCCCHHHHH-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCEECCCCC
T ss_conf             554422288875-1166789999997248998659999858868698999810159806504359


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Deinococcus radiodurans [TaxId: 1299]