Query gi|254780292|ref|YP_003064705.1| 50S ribosomal protein L13 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 155
No_of_seqs 111 out of 1699
Neff 4.9
Searched_HMMs 13730
Date Wed Jun 1 02:11:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780292.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrg1 c.21.1.1 (G:30-171) Ri 100.0 0 0 385.9 11.3 142 3-147 1-142 (142)
2 d2j01n1 c.21.1.1 (N:1-139) Rib 100.0 0 0 388.8 6.9 139 2-143 1-139 (139)
3 d2gych1 c.21.1.1 (H:1-140) Rib 100.0 0 0 398.5 -7.4 140 2-142 1-140 (140)
4 d1j3aa_ c.21.1.1 (A:) Ribosoma 100.0 2.5E-44 0 278.2 9.2 122 17-151 2-124 (142)
5 d1vqoj1 c.21.1.1 (J:4-145) Rib 100.0 1.7E-42 0 267.5 7.9 121 11-149 2-123 (142)
6 d2bgwa2 c.52.1.20 (A:16-148) X 28.6 17 0.0013 15.5 2.5 37 16-57 5-41 (133)
7 d1tula_ b.85.5.1 (A:) Tlp20, b 18.5 23 0.0017 14.7 1.5 15 48-62 57-71 (102)
8 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 18.0 28 0.0021 14.3 1.9 14 12-25 45-58 (132)
9 d1xq4a_ b.1.23.1 (A:) ApaG {Bo 17.7 25 0.0018 14.6 1.5 15 12-26 46-60 (123)
10 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 16.8 31 0.0023 14.0 1.8 14 12-25 47-60 (124)
No 1
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=0 Score=385.90 Aligned_cols=142 Identities=45% Similarity=0.811 Sum_probs=137.1
Q ss_pred EEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 11326843602006999789874576799999998465652103455668889997510100156012113333115755
Q gi|254780292|r 3 PTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYP 82 (155)
Q Consensus 3 kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgyp 82 (155)
|||+++. ++|+||||||+||+||||||.||++|+|||||+|+|++||||+||||||+++.+||+||.+|+|++|||||
T Consensus 1 kt~~~k~--~~r~W~viDA~~~~lGRlAs~iAk~L~GK~kp~y~p~~d~Gd~ViViNa~ki~~tG~K~~~k~y~~htg~p 78 (142)
T d2zjrg1 1 KTYIPKN--DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQ 78 (142)
T ss_dssp CCCCCCC--SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSC
T ss_pred CCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECCCCEEEECCCCHHHHEEHHHCCCC
T ss_conf 9627877--77658999799995688999999998557665255235678779974873358727535531000110344
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHC
Q ss_conf 76336302000012487999999997308998547899962701078999713208547616652
Q gi|254780292|r 83 GGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKM 147 (155)
Q Consensus 83 GG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~ 147 (155)
||+++.++.+++ +++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|+++++
T Consensus 79 gg~k~~~~~~~~-~r~P~~ii~~aV~gMLPkn~lgr~~lkrLkvy~G~~hp~~~q~P~~l~~~~l 142 (142)
T d2zjrg1 79 GGLKTETAREAL-SKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL 142 (142)
T ss_dssp SSCCEEEESTTT-TSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCCCCC
T ss_pred CCCCCCCHHHHH-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCEECCCCC
T ss_conf 554422288875-1166789999997248998659999858868698999810159806504359
No 2
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=388.83 Aligned_cols=139 Identities=46% Similarity=0.891 Sum_probs=135.3
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
||||+|+ +++|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|++||+||.++.|++||||
T Consensus 1 mkt~~p~--~~~r~W~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~hsgy 78 (139)
T d2j01n1 1 MKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGY 78 (139)
T ss_dssp CCCCCCC--CCCCCCCEECCTTSBTTHHHHHHHHHHTTSSSSSCCTTTCCCCCCEECSCSCCBCSSCCSSSSBCCCCCCS
T ss_pred CCCCCCC--CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCCEEEEECHHHEEEECCCCCEEEEEEECCC
T ss_conf 9865755--35521899969999558889999999854440014032478746999343685650653011245542133
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEEE
Q ss_conf 57633630200001248799999999730899854789996270107899971320854761
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMD 143 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~ 143 (155)
|||+++.+++++. .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.||
T Consensus 79 pGg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lg~~~l~rLkvy~g~~hp~~aq~p~~l~ 139 (139)
T d2j01n1 79 PGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLE 139 (139)
T ss_dssp SSCCCCCBHHHHH-HSSCSHHHHHHHHTTSCSSHHHHHHHTTCEECSSSCCTTCSCCCCCC-
T ss_pred CCCCCCCCHHHHC-CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEECC
T ss_conf 6864533377741-447789999999854889765999985887969899985568987088
No 3
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=398.50 Aligned_cols=140 Identities=44% Similarity=0.823 Sum_probs=137.4
Q ss_pred CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY 81 (155)
Q Consensus 2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy 81 (155)
||||++++++++|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|.+||+||.++.||+||||
T Consensus 1 Mkt~~~k~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNaeki~~tG~K~~~k~y~~~sgy 80 (140)
T d2gych1 1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH 80 (140)
T ss_dssp CCCCCSSSCCTTCCCCCCCCSSSCSHHHHSSSSSSSTTCSSSCCCSSSCCCCCCCCSCSSSCCCCSSCSTTCCCCCCCSS
T ss_pred CCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCC
T ss_conf 97625885671763799969999568889999999985468754101477767999963363056724654312003337
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEE
Q ss_conf 5763363020000124879999999973089985478999627010789997132085476
Q gi|254780292|r 82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFM 142 (155)
Q Consensus 82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l 142 (155)
|||+++.++.+++ .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|
T Consensus 81 pgg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lgr~~lkrLkvy~g~~hph~aQ~P~~l 140 (140)
T d2gych1 81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVL 140 (140)
T ss_dssp CSSCCCCCCHHHH-TTCSSSSTTTSSSSCSCSSSTTSSTTTSSCCCCCCTTTTTSCCCCCC
T ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCC
T ss_conf 9885311389997-65788999999971089975599998587896989998444488449
No 4
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00 E-value=2.5e-44 Score=278.16 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=115.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 99978987457679999999846565210345566888999751010015601211333311575576336302000012
Q gi|254780292|r 17 ILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAG 96 (155)
Q Consensus 17 ~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~~ 96 (155)
-||||+|++||||||.||++| ||||+||||||++|++||+||.++.||+|+|||||++..++.+++ +
T Consensus 2 ~vIDA~g~~lGRLAs~vAk~L------------~~Gd~ViVvNaeki~~tG~K~~~k~~~~~~~~~g~~~~~~~~~~~-~ 68 (142)
T d1j3aa_ 2 RIINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFY-P 68 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHH------------HTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------C-C
T ss_pred EEEECCCCCHHHHHHHHHHHH------------HCCCEEEEEECHHHEECCCCHHHHHHHHHHCCCCCCCCCCHHHHC-C
T ss_conf 799689982278999999999------------579949999650414417504555565411135534575233311-2
Q ss_pred CCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCC
Q ss_conf 4879999999973089-985478999627010789997132085476166528131
Q gi|254780292|r 97 ASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKN 151 (155)
Q Consensus 97 ~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn 151 (155)
++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+.++.+++++.+
T Consensus 69 ~~P~~il~~aVrGMLP~k~~lgr~~~krLkvy~G~~h~~~~q~~~~~~~a~~~~~~ 124 (142)
T d1j3aa_ 69 KRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLS 124 (142)
T ss_dssp CSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBGGGSS
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCHHHCCCCCCCHHHHHHHC
T ss_conf 38489999999702678886799998387783599997233587436678876424
No 5
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=1.7e-42 Score=267.49 Aligned_cols=121 Identities=23% Similarity=0.388 Sum_probs=110.0
Q ss_pred HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 60200699978987457679999999846565210345566888999751010015601211333311575576336302
Q gi|254780292|r 11 EVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTA 90 (155)
Q Consensus 11 ~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~ 90 (155)
+++ +|.||||+|++||||||.||+.|+ +||+||||||++|.+||+||.++.||+|++||||.+..
T Consensus 2 ~~~-k~ivIDA~~~~lGRLAs~vAk~l~------------~Gd~ViVvNaeki~itG~k~~~k~~y~~~~~~g~~kg~-- 66 (142)
T d1vqoj1 2 EFD-ADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY-- 66 (142)
T ss_dssp CCC-CSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC--
T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECHHHCCCCCCHHHHHEEEEEECCCCCCCE--
T ss_conf 866-339997999855888999999863------------89879999771420247512200003566337885435--
Q ss_pred CCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCC
Q ss_conf 0000124879999999973089-9854789996270107899971320854761665281
Q gi|254780292|r 91 KEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNP 149 (155)
Q Consensus 91 ~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~ 149 (155)
+.+++|++||++||+|||| ++.+|+.+|+||+||.|++|||++|+|+...+..+..
T Consensus 67 ---~~~r~P~~il~raVrGMLP~k~~~gr~~~krLkvy~G~~h~~~~q~~~~~~~~~~~~ 123 (142)
T d1vqoj1 67 ---FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSN 123 (142)
T ss_dssp ---CCCCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCSSSCCBCCTTCBCCTTTC
T ss_pred ---EHHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCC
T ss_conf ---501288899999981747889904788972758948999964457677456522489
No 6
>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]}
Probab=28.60 E-value=17 Score=15.49 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=26.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 699978987457679999999846565210345566888999
Q gi|254780292|r 16 WILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVI 57 (155)
Q Consensus 16 W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvV 57 (155)
=.+||...+. |.+...|..+.-+.-.-+.++|||++.
T Consensus 5 ~IiiD~RE~~-----s~~~~~l~~~gi~~~~~~L~~GDy~i~ 41 (133)
T d2bgwa2 5 RVYVDVREER-----SPVPSILESLGVQVIPKQLPMGDYLVS 41 (133)
T ss_dssp EEEEETTTTT-----SSHHHHHHHTTCEEEEECCSSSSEEEE
T ss_pred EEEEECCCCC-----CHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 9999899996-----045699997899899997687679996
No 7
>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein {AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]}
Probab=18.46 E-value=23 Score=14.75 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=11.6
Q ss_pred CCCCCCEEEEECCCC
Q ss_conf 556688899975101
Q gi|254780292|r 48 SADDGDHVVIINASK 62 (155)
Q Consensus 48 ~~d~GD~VvViNa~k 62 (155)
.+.||||+|+-|.-+
T Consensus 57 ~v~cGdY~v~~N~~~ 71 (102)
T d1tula_ 57 TVSCGNYGVLCNLVQ 71 (102)
T ss_dssp EEESSSEEEEEECCS
T ss_pred EEEECCEEEEEECCC
T ss_conf 998078899997213
No 8
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=17.96 E-value=28 Score=14.25 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=12.0
Q ss_pred CCEEEEEEECCCCC
Q ss_conf 02006999789874
Q gi|254780292|r 12 VEKKWILVDAKGLI 25 (155)
Q Consensus 12 ~~r~W~iiDA~~~~ 25 (155)
..|.|.|.|+.|+.
T Consensus 45 lsR~W~I~d~~G~~ 58 (132)
T d1tzaa_ 45 ETRHWIITDANGKT 58 (132)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EEEEEEEECCCCCE
T ss_conf 93289999899999
No 9
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=17.73 E-value=25 Score=14.60 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.3
Q ss_pred CCEEEEEEECCCCCH
Q ss_conf 020069997898745
Q gi|254780292|r 12 VEKKWILVDAKGLIV 26 (155)
Q Consensus 12 ~~r~W~iiDA~~~~l 26 (155)
+.|.|.|.|+.|...
T Consensus 46 ~sR~W~I~d~~g~~~ 60 (123)
T d1xq4a_ 46 ISRHWIITDGEERVQ 60 (123)
T ss_dssp EEEEEEEECTTSCEE
T ss_pred EEEEEEEEECCCCEE
T ss_conf 840679993998779
No 10
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=16.82 E-value=31 Score=14.03 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=11.8
Q ss_pred CCEEEEEEECCCCC
Q ss_conf 02006999789874
Q gi|254780292|r 12 VEKKWILVDAKGLI 25 (155)
Q Consensus 12 ~~r~W~iiDA~~~~ 25 (155)
+.|.|.|.|+.|..
T Consensus 47 lsR~W~I~d~~g~~ 60 (124)
T d1xvsa_ 47 MSRRWLITDADGKQ 60 (124)
T ss_dssp EEEEEEEEETTCCE
T ss_pred EEEEEEEEECCCCE
T ss_conf 91188999599978
Done!