PSIBLAST alignment of GI: 254780292 and protein with PDB id: 1vsp
>gi|160285435|pdb|1VSP|H Chain H, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh Length = 140
Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/143 (45%), Positives = 101/143 (70%), Gaps = 3/143 (2%)
Query: 2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINAS 61
+ T+ K +VE +W+L+DA+G +GRLA++IA LRGK++P +TP+ GD VV++NA
Sbjct: 1 VKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNAD 58
Query: 62 KVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQM 121
K+ +GKK +QK Y R++GYPGG+KK +++LA P +L+ A+ MLP+GPL R+
Sbjct: 59 KIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLA-THPERVLEHAVKGMLPKGPLGRRLF 117
Query: 122 KNLHIYAEDHHPHEAQKPVFMDI 144
K L +YA HPH+AQ+P +++
Sbjct: 118 KRLKVYAGPDHPHQAQRPEKLEV 140