RPSBLAST alignment of GI: 254780292 and protein with PDBid: 3f1f

>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163
 Score =  176 bits (448), Expect = 2e-45
 Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 3/144 (2%)

Query: 1   MIPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINA 60
           ++ T+  K  +VE +W+L+DA+G  +GRLA++IA  LRGK++P +TP+   GD VV++NA
Sbjct: 23  LVKTYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNA 80

Query: 61  SKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQ 120
            K+  +GKK +QK Y R++GYPGG+KK   +++L    P  +L+ A+  MLP+GPL R+ 
Sbjct: 81  DKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKML-ATHPERVLEHAVKGMLPKGPLGRRL 139

Query: 121 MKNLHIYAEDHHPHEAQKPVFMDI 144
            K L +YA   HPH+AQ+P  +++
Sbjct: 140 FKRLKVYAGPDHPHQAQRPEKLEV 163