RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780292|ref|YP_003064705.1| 50S ribosomal protein L13 [Candidatus Liberibacter asiaticus str. psy62] (155 letters) >d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]} Length = 142 Score = 148 bits (375), Expect = 2e-37 Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 3/144 (2%) Query: 4 TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63 T+ K E+ W++VDA G+ +GRLA+ IA R+RGK++P +TP+ GD VV+INA++V Sbjct: 2 TYIPK--NDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQV 59 Query: 64 AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123 A +GKK D K Y R+TGY GG+K TA+E L+ P +++ A+ MLP+G R Sbjct: 60 ALTGKKLDDKVYTRYTGYQGGLKTETAREALSK-HPERVIEHAVFGMLPKGRQGRAMHTR 118 Query: 124 LHIYAEDHHPHEAQKPVFMDIAKM 147 L +YA + HPH AQKP + + Sbjct: 119 LKVYAGETHPHSAQKPQVLKTQPL 142 >d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]} Length = 140 Score = 141 bits (356), Expect = 3e-35 Identities = 63/136 (46%), Positives = 91/136 (66%), Gaps = 1/136 (0%) Query: 4 TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63 TF K V++ W +VDA G +GRLA+++A RLRGK+K YTP D GD+++++NA KV Sbjct: 3 TFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKV 62 Query: 64 AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123 A +G K K YY HTG+ GGIK+ T +E++A P +++ A+ MLP+GPL R + Sbjct: 63 AVTGNKRTDKVYYHHTGHIGGIKQATFEEMIA-RRPERVIEIAVKGMLPKGPLGRAMFRK 121 Query: 124 LHIYAEDHHPHEAQKP 139 L +YA + H H AQ+P Sbjct: 122 LKVYAGNEHNHAAQQP 137 >d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]} Length = 139 Score = 138 bits (349), Expect = 2e-34 Identities = 63/140 (45%), Positives = 97/140 (69%), Gaps = 3/140 (2%) Query: 4 TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63 T+ K +VE +W+L+DA+G +GRLA++IA LRGK++P +TP+ GD VV++NA K+ Sbjct: 3 TYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKI 60 Query: 64 AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123 +GKK +QK Y R++GYPGG+KK +++ P +L+ A+ MLP+GPL R+ K Sbjct: 61 RVTGKKLEQKIYTRYSGYPGGLKKIPLEKM-LATHPERVLEHAVKGMLPKGPLGRRLFKR 119 Query: 124 LHIYAEDHHPHEAQKPVFMD 143 L +YA HPH+AQ+P ++ Sbjct: 120 LKVYAGPDHPHQAQRPEKLE 139 >d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Score = 109 bits (275), Expect = 7e-26 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 18/139 (12%) Query: 14 KKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQK 73 ++VDA+ I+GR+ASQ+A + DG+ V ++NA + +G++ Sbjct: 4 DADVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIV 51 Query: 74 TYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHH 132 Y G + P I K+ I MLP + R+ +++ +Y + + Sbjct: 52 EKYEKRVDIGNDNGYFYPK-----RPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPY 106 Query: 133 PHEAQKPVFMDIAKMNPKN 151 + + + +++ Sbjct: 107 DEDGEVLDGTSLDRLSNIK 125 >d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 142 Score = 98.9 bits (246), Expect = 2e-22 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 18 LVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYR 77 +++A GLI+GRLAS++A L +G+ VVI+NA K +G + + Y+ Sbjct: 3 IINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKYK 50 Query: 78 HTGYPGGIKKTTAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEA 136 + I+++ I MLP + RK + L +Y + Sbjct: 51 QRTGLRTLTNPRRGPFYPK-RSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109 Query: 137 QKPVFMDIAKMNPKNSRR 154 ++ + A ++ + + Sbjct: 110 KQLETIVEAHVSRLSRPK 127 >d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} Length = 384 Score = 25.7 bits (56), Expect = 1.7 Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 71 DQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAED 130 Q Y+ K+ ++ G T + + A +L + P + Q+K +++ Sbjct: 78 KQIIIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTK 137 Query: 131 HH 132 H Sbjct: 138 HL 139 >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 Score = 24.7 bits (53), Expect = 4.1 Identities = 10/54 (18%), Positives = 18/54 (33%) Query: 102 ILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNSRRT 155 ILKK + G + + ++ I + Q + MD+ R Sbjct: 159 ILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERN 212 >d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Length = 287 Score = 24.0 bits (52), Expect = 5.6 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%) Query: 109 RMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144 + + R MK + + H HE MD+ Sbjct: 112 KRWQDISMMR--MKTIGEHIVAHIQHEVDFLFCMDV 145 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 588,578 Number of extensions: 26817 Number of successful extensions: 60 Number of sequences better than 10.0: 1 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 11 Length of query: 155 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,336,656 Effective search space: 102922512 Effective search space used: 102922512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.0 bits)