HHsearch alignment of GI: 254780293 and MMDB domain: 2zkq_i_
>2zkq_i (i:) 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=328.04 Aligned_cols=133 Identities=26% Similarity=0.288 Sum_probs=123.7
Q ss_pred CCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHH-HHHHHHCCCCCEEEEEEEECCCCCHHH
Q ss_conf 6545435500131112108999998189739994100888446989999999-999873856641079998259830188
Q gi|254780293|r 38 RKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIK-RPFNTVSQDNMYDVFATVSGGGLSGQA 116 (170)
Q Consensus 38 ~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~-~Pl~~~~~~~~~Di~~~V~GGG~sgQa 116 (170)
+++|..+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.++ .||.+++..++|||+|+|+|||+||||
T Consensus 2 ~~~~~~~~~~~~GrRKta~A~v~l~~G~G~I~INg~~l~~yf~~~~~~~~~~~~pl~~~~~~~~~Dv~v~v~GGG~~gQa 81 (146)
T 2zkq_i 2 PSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQI 81 (146)
T ss_dssp ------CCEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHH
T ss_pred CCCCCCCEEEEECCCCEEEEEEEEEECCCCEEECCCCHHHCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCCCEEHH
T ss_conf 98888618889662602899999991676489869778890689899998433431153223563258997338813003
Q ss_pred HHHHHHHHHHHHHHCHHH-----HHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999999997657634-----487997------798335755416759528984335430579
Q gi|254780293|r 117 SAICHGVAKALTYFQPDL-----RPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 117 ~AirlaIarAL~~~~p~~-----r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
+||||||||||+.|+|++ ++.||+ .||||+|||++||||||++|||++||||||
T Consensus 82 ~Air~aiaraL~~~~~~~~~~~~r~~lk~~~~~~~~glL~rD~R~~ErKK~G~~kARk~~q~skR 146 (146)
T 2zkq_i 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 26499999999986143037445088898776443876346730004586898756647376779