Query gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 129 out of 946
Neff 5.2
Searched_HMMs 23785
Date Mon May 30 07:46:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780293.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_I Ribosomal protein S9; s 100.0 0 0 364.6 9.3 135 36-170 62-197 (197)
2 2vqe_I 30S ribosomal protein S 100.0 0 0 335.7 10.8 126 45-170 3-128 (128)
3 3ofo_I 30S ribosomal protein S 100.0 0 0 341.2 2.8 125 46-170 3-127 (127)
4 3jyv_I 40S ribosomal protein S 100.0 0 0 315.1 9.3 124 46-170 2-138 (138)
5 2zkq_i 40S ribosomal protein S 100.0 0 0 315.9 7.9 125 45-170 9-146 (146)
6 3b5x_A Lipid A export ATP-bind 80.8 2.9 0.00012 20.7 5.5 80 49-129 378-497 (582)
7 3by4_A OTU1, ubiquitin thioest 73.7 0.55 2.3E-05 25.1 0.0 32 99-130 177-208 (212)
8 3b60_A Lipid A export ATP-bind 68.0 1.3 5.7E-05 22.7 1.0 80 49-129 378-497 (582)
9 2hyd_A ABC transporter homolog 59.4 4.3 0.00018 19.6 2.3 81 49-130 376-495 (578)
10 1mv5_A LMRA, multidrug resista 59.2 5.3 0.00022 19.0 2.7 80 49-129 37-156 (243)
11 2x8g_A Thioredoxin glutathione 56.6 3.5 0.00015 20.1 1.4 25 98-122 103-127 (598)
12 3ihg_A RDME; flavoenzyme, anth 55.7 8.1 0.00034 17.9 3.1 10 113-122 323-332 (535)
13 3cty_A Thioredoxin reductase; 55.1 7.3 0.00031 18.2 2.8 11 105-115 158-168 (319)
14 2gmh_A Electron transfer flavo 48.2 8.7 0.00037 17.7 2.3 11 96-106 323-333 (584)
15 2wwb_N 60S ribosomal protein L 47.9 9 0.00038 17.6 2.4 34 107-141 36-69 (120)
16 3nh6_A ATP-binding cassette SU 45.3 12 0.00049 16.9 2.6 79 50-129 90-207 (306)
17 3nix_A Flavoprotein/dehydrogen 44.9 13 0.00053 16.7 2.7 12 59-70 217-229 (421)
18 3k7m_X 6-hydroxy-L-nicotine ox 44.8 12 0.00049 16.9 2.5 11 123-133 340-350 (431)
19 1hyu_A AHPF, alkyl hydroperoxi 43.6 4.9 0.0002 19.3 0.4 25 97-123 209-233 (521)
20 2zkr_v 60S ribosomal protein L 42.4 10 0.00043 17.3 1.9 43 107-149 36-84 (123)
21 1fl2_A Alkyl hydroperoxide red 41.5 15 0.00062 16.3 2.7 16 104-119 146-161 (310)
22 3g5u_A MCG1178, multidrug resi 41.4 10 0.00044 17.2 1.8 27 50-76 1069-1098(1284)
23 1wdd_A Ribulose bisphosphate c 41.1 14 0.00058 16.5 2.4 45 102-147 397-468 (477)
24 1ykw_A Rubisco-like protein; b 38.3 16 0.00066 16.1 2.4 47 100-147 374-435 (435)
25 2i0z_A NAD(FAD)-utilizing dehy 37.0 18 0.00074 15.8 2.5 12 109-120 33-44 (447)
26 2oem_A 2,3-diketo-5-methylthio 34.5 22 0.00092 15.2 2.6 45 102-147 353-412 (413)
27 2bcg_G Secretory pathway GDP d 31.9 24 0.001 15.0 2.9 12 118-129 243-254 (453)
28 3fbs_A Oxidoreductase; structu 31.7 24 0.001 14.9 2.7 18 103-120 142-159 (297)
29 2uzz_A N-methyl-L-tryptophan o 30.7 25 0.0011 14.8 2.5 14 115-128 342-355 (372)
30 2wpf_A Trypanothione reductase 28.4 28 0.0012 14.6 2.8 22 100-121 189-210 (495)
31 3jsk_A Cypbp37 protein; octame 27.9 28 0.0012 14.5 2.9 41 83-125 62-102 (344)
32 2q7v_A Thioredoxin reductase; 27.7 28 0.0012 14.5 2.6 12 104-115 154-165 (325)
33 3o0h_A Glutathione reductase; 27.4 29 0.0012 14.5 2.9 15 104-118 193-207 (484)
34 3f8d_A Thioredoxin reductase ( 27.4 29 0.0012 14.5 2.8 13 104-116 156-168 (323)
35 2ihr_1 Peptide chain release f 26.3 18 0.00075 15.8 1.0 29 48-76 197-228 (365)
36 1mo9_A ORF3; nucleotide bindin 25.9 31 0.0013 14.3 2.5 15 104-118 216-230 (523)
37 1rp0_A ARA6, thiazole biosynth 25.7 20 0.00082 15.5 1.1 21 100-122 39-59 (284)
38 2x36_A LON protease homolog, m 25.7 31 0.0013 14.3 3.9 67 62-128 42-113 (207)
39 1v59_A Dihydrolipoamide dehydr 24.7 32 0.0014 14.2 2.3 18 103-120 184-201 (478)
40 3kdn_A Rubisco, ribulose bisph 24.6 27 0.0011 14.7 1.6 29 116-144 405-441 (444)
41 1gqe_A Release factor 2, RF2; 23.5 22 0.00093 15.2 1.1 28 49-76 210-240 (365)
42 2gag_B Heterotetrameric sarcos 23.5 34 0.0014 14.0 2.7 15 115-129 360-374 (405)
43 1so9_A Cytochrome C oxidase as 23.3 12 0.0005 16.9 -0.4 15 101-115 5-20 (164)
44 1fec_A Trypanothione reductase 23.1 35 0.0015 14.0 2.8 24 101-124 186-209 (490)
45 1v43_A Sugar-binding transport 22.9 14 0.00057 16.5 -0.1 75 50-129 47-158 (372)
46 3l8k_A Dihydrolipoyl dehydroge 22.7 35 0.0015 13.9 2.6 21 101-121 171-191 (466)
47 1zk7_A HGII, reductase, mercur 22.4 36 0.0015 13.9 2.9 18 104-121 178-195 (467)
48 1lvl_A Dihydrolipoamide dehydr 22.3 36 0.0015 13.9 2.3 16 104-119 173-188 (458)
49 2qae_A Lipoamide, dihydrolipoy 21.9 37 0.0015 13.8 2.8 20 103-122 175-194 (468)
50 2r9z_A Glutathione amide reduc 21.6 37 0.0016 13.8 2.9 15 104-118 168-182 (463)
51 2a87_A TRXR, TR, thioredoxin r 21.5 37 0.0016 13.8 2.4 12 104-115 157-168 (335)
52 3lad_A Dihydrolipoamide dehydr 21.4 38 0.0016 13.8 2.5 19 104-122 182-200 (476)
53 1ryi_A Glycine oxidase; flavop 21.2 38 0.0016 13.7 2.9 11 62-72 262-272 (382)
54 2zbw_A Thioredoxin reductase; 20.8 39 0.0016 13.7 2.7 14 102-115 152-165 (335)
55 2qcu_A Aerobic glycerol-3-phos 20.6 39 0.0016 13.7 2.5 26 104-130 347-372 (501)
56 1z0w_A Putative protease LA ho 20.4 40 0.0017 13.6 3.1 63 62-127 40-108 (207)
No 1
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=364.62 Aligned_cols=135 Identities=48% Similarity=0.682 Sum_probs=128.7
Q ss_pred CCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCC-CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCH
Q ss_conf 346545435500131112108999998189739994100888446-9899999999998738566410799982598301
Q gi|254780293|r 36 HSRKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFT-QDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSG 114 (170)
Q Consensus 36 ~~~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~-~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sg 114 (170)
..+.....+..|||||||+|+|+|||++|+|+|+|||+|+++||+ ++.+++.+++||.+++.+++|||+|+|+|||+||
T Consensus 62 ~~~~~~a~~~i~gtGRRKtAiArV~l~~GsGkI~INgk~l~~YF~~~~~~~~~v~~PL~~t~~~~kyDI~v~V~GGG~sG 141 (197)
T 3bbn_I 62 RLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSG 141 (197)
T ss_dssp ---------CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHH
T ss_pred HCCCCCCCEEEEEECCCCCEEEEEEEEECCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
T ss_conf 07776441179864688157999999807438999993489977947999998621477745477424899996897576
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88899999999997657634487997798335755416759528984335430579
Q gi|254780293|r 115 QASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 115 Qa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
||+||||||||||+.++|++++.||++||||+|+|++||||||++||||+||||||
T Consensus 142 QA~AIRlaIARAL~~~~p~~r~~Lk~~glLtrD~R~~ERKK~G~~kARk~~Q~SKR 197 (197)
T 3bbn_I 142 QAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR 197 (197)
T ss_dssp HHHHHHHHHHHHTTTSCGGGSHHHHTTTCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999999979787788987769215741235676787565426255679
No 2
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=0 Score=335.70 Aligned_cols=126 Identities=48% Similarity=0.786 Sum_probs=123.9
Q ss_pred CCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 50013111210899999818973999410088844698999999999987385664107999825983018889999999
Q gi|254780293|r 45 RSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170)
Q Consensus 45 ~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170)
..|||||||||+|+|||++|+|+|+|||+|+++||+++.+++.+++||.+++..++|||+|+|+|||+||||+|||||||
T Consensus 3 ~~y~~GrRKta~Arv~l~~G~G~I~INg~~~~~yf~~~~~~~~~~~pl~~~~~~~k~DI~i~V~GGG~sgQa~Air~aia 82 (128)
T 2vqe_I 3 QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIA 82 (128)
T ss_dssp CEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEECCEEEEEECCEEHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 78985746038999999858157999998699988579999998613654053455259999978866389999999999
Q ss_pred HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9997657634487997798335755416759528984335430579
Q gi|254780293|r 125 KALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 125 rAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
|||+.++|++++.|++.||||+|+|++||||||++||||+||||||
T Consensus 83 RaL~~~~~~~~~~lk~~~lL~~D~R~~ErKK~G~~kARk~~Q~skR 128 (128)
T 2vqe_I 83 RALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128 (128)
T ss_dssp HHHHHHCGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999979787898988789036753444586898776847366679
No 3
>3ofo_I 30S ribosomal protein S9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_I* 3iy8_I 2wwl_I 3ofp_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I 2qbf_I 2qbh_I* 2qbj_I* 2qou_I* 2qow_I* ...
Probab=100.00 E-value=0 Score=341.22 Aligned_cols=125 Identities=48% Similarity=0.792 Sum_probs=123.4
Q ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 00131112108999998189739994100888446989999999999873856641079998259830188899999999
Q gi|254780293|r 46 SYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAK 125 (170)
Q Consensus 46 ~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIar 125 (170)
-|||||||||+|+|||++|+|+|+|||+|+++||+++.+++.+++||.++++.++|||+|+|+|||+||||+||||||||
T Consensus 3 yy~~GrRKtaiArv~l~~G~G~i~IN~~~~~~yf~~~~~~~~~~~Pl~~~~~~~k~di~~~V~GGG~sgQa~Air~aiar 82 (127)
T 3ofo_I 3 YYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITR 82 (127)
T ss_dssp BCCCCBCSSCEEEEEEESCCSCBCTTSSCTTTTTTTSTTTTTTTTTSSSSCCTTSSEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEEEECCEEEEECCEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 60206063489999999373389999840899587099999986258874766632489999789766899999999999
Q ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997657634487997798335755416759528984335430579
Q gi|254780293|r 126 ALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 126 AL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
||+.++|++++.|++.||||+|||++||||||++||||+||||||
T Consensus 83 aL~~~~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~Q~skR 127 (127)
T 3ofo_I 83 ALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 127 (127)
T ss_dssp HTTSSCTTTTTHHHHTTCSSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999979787898987859226764444576898664526255679
No 4
>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I
Probab=100.00 E-value=0 Score=315.06 Aligned_cols=124 Identities=31% Similarity=0.413 Sum_probs=116.1
Q ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 0013111210899999818973999410088844698999999999987385--66410799982598301888999999
Q gi|254780293|r 46 SYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQ--DNMYDVFATVSGGGLSGQASAICHGV 123 (170)
Q Consensus 46 ~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~--~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170)
.+++||||||+|+|||++|+|+|+|||+|+++||+. .+++.+++||.+++. .++|||+|+|+|||+||||+||||||
T Consensus 2 v~~~GrRKta~A~v~l~~G~G~i~INg~~~~~~~~~-~~~~~i~~Pl~l~~~~~~~~~di~i~V~GGG~sgQa~Airlai 80 (138)
T 3jyv_I 2 VQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPE-ILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAI 80 (138)
T ss_dssp BCCCCCSSSCEEEEEEEESCCCEEETTEEHHHHCCS-SSTTGGGHHHHHTSSCSSSSEEEEEEEESCCTTTHHHHHHHHH
T ss_pred CEEECCCCCEEEEEEEECCCCEEEECCCCHHHHCCH-HHHHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 241764831899999982855699999115450889-9999986558774612246644899996575648986999999
Q ss_pred HHHHHHH-----CHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999765-----76344879977------98335755416759528984335430579
Q gi|254780293|r 124 AKALTYF-----QPDLRPQIKKG------GFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 124 arAL~~~-----~p~~r~~Lk~~------glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
||||+.+ +|+.++.||+. ||||+|||++||||||++||||+||||||
T Consensus 81 aRaLv~~~~~~~~~~~r~~Lk~~~~~y~~glLtrD~R~~ErKK~G~~kARk~~Q~skR 138 (138)
T 3jyv_I 81 AKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 138 (138)
T ss_dssp HHTTTTCCCSSCSTTHHHHHHSSSCSSCCCSSSCCCCCCCCCCSSSSCSSSCSCCSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9999987201168566799998876445776725641324688999765636366679
No 5
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=315.91 Aligned_cols=125 Identities=28% Similarity=0.352 Sum_probs=114.0
Q ss_pred CCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 50013111210899999818973999410088844698999999999987385--6641079998259830188899999
Q gi|254780293|r 45 RSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQ--DNMYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 45 ~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~--~~~~Di~~~V~GGG~sgQa~Airla 122 (170)
..+++||||||+|+|||.+|+|+|+|||+|+++||++ .+++.+++||.+++. .++|||+|+|+|||+||||+|||||
T Consensus 9 ~v~~~GrRKtaiArv~l~~G~G~i~INgk~~~~yf~~-~~~~~i~~pl~l~~~~~~~~~Di~~~V~GGG~sgQA~AiRla 87 (146)
T 2zkq_i 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87 (146)
T ss_dssp CEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTT-SCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCEEEEEEEEEEECCCCEEECCCCHHHCCCH-HHHHHHHCCHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 8899674603899999992766589879458990659-889887165321462012565459999578600887199999
Q ss_pred HHHHHHHHCHHH-----HHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997657634-----487997------798335755416759528984335430579
Q gi|254780293|r 123 VAKALTYFQPDL-----RPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 123 IarAL~~~~p~~-----r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
|||||+.|+|++ ++.|++ .||||+|||++||||||++||||+||||||
T Consensus 88 IARAL~~~~~~~~~~~~k~~Lk~~~~~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999986102047656498999886554875566841005586898656647476679
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.78 E-value=2.9 Score=20.67 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=46.7
Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHHCC-----------------CHHHHHHH-------------HHHHHHH
Q ss_conf 3111210899999---8189739994100888446-----------------98999999-------------9999873
Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYFT-----------------QDLLVLNI-------------KRPFNTV 95 (170)
Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~-----------------~~~~r~~i-------------~~Pl~~~ 95 (170)
+|-=|++.++.-+ .|-+|.|.|||.|+.+|-+ +...++.+ .+-+..+
T Consensus 378 sGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~l~~~ 457 (582)
T 3b5x_A 378 SGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQA 457 (582)
T ss_pred CCCHHHHHHHHHCCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98568899997617878998579999998101899999863489815761036367877750210025658999999995
Q ss_pred C-------CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8-------566410799982598301888999999999976
Q gi|254780293|r 96 S-------QDNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170)
Q Consensus 96 ~-------~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170)
+ ....+|-.+.-.|-.+|| -+-=|++|||||..
T Consensus 458 ~l~~~i~~l~~gl~t~i~e~g~~LSg-Gq~QRi~laRal~~ 497 (582)
T 3b5x_A 458 HAMEFIENMPQGLDTVIGENGTSLSG-GQRQRVAIARALLR 497 (582)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 36999973756457801278897799-99999999999971
No 7
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=73.66 E-value=0.55 Score=25.10 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=26.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64107999825983018889999999999765
Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVAKALTYF 130 (170)
Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~ 130 (170)
..|.+.|.|.|.|+.||.+|..||-+-.=+.|
T Consensus 177 ~~f~l~C~~C~~~~~Ge~~a~~Ha~~TGH~~F 208 (212)
T 3by4_A 177 HKAQIKCNTCQMTFVGEREVARHAESTGHVDF 208 (212)
T ss_dssp --------------------------------
T ss_pred CCEEEECCCCCCCCEEHHHHHHHHHHHCCCCC
T ss_conf 58488843489961678999999998689876
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=68.00 E-value=1.3 Score=22.70 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=46.5
Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHHCC-----------------CHHHH-------------HHHHHHHHHH
Q ss_conf 3111210899999---8189739994100888446-----------------98999-------------9999999873
Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYFT-----------------QDLLV-------------LNIKRPFNTV 95 (170)
Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~-----------------~~~~r-------------~~i~~Pl~~~ 95 (170)
+|--||+.+++-+ .|-+|+|.|||.|+.++-+ +...+ +.+.+-+..+
T Consensus 378 sGsGKSTLlkll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~i~~~l~~~ 457 (582)
T 3b60_A 378 SGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457 (582)
T ss_dssp TTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99849999999807874898189999998440889999852589904784467738999847997558999999999982
Q ss_pred CCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 856-------6410799982598301888999999999976
Q gi|254780293|r 96 SQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170)
Q Consensus 96 ~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170)
+.. +.+|-.+.-.|..+|| -+.=|++|||||..
T Consensus 458 ~l~~~i~~l~~gl~t~i~e~g~~LSg-Gq~Qrl~laRall~ 497 (582)
T 3b60_A 458 YAMDFINKMDNGLDTIIGENGVLLSG-GQRQRIAIARALLR 497 (582)
T ss_dssp TCHHHHHHSTTGGGSBCCTTSCSSCH-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCEECCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 98266760768777763689986899-99999999999950
No 9
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A*
Probab=59.38 E-value=4.3 Score=19.56 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=45.8
Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHH-----------------CCCHHH------------HHHHHHHHHHHC
Q ss_conf 3111210899999---81897399941008884-----------------469899------------999999998738
Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKY-----------------FTQDLL------------VLNIKRPFNTVS 96 (170)
Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Y-----------------f~~~~~------------r~~i~~Pl~~~~ 96 (170)
+|-=|++.++.-+ .|.+|.|.+||+++.++ +.+.+. .+.+.+-+..++
T Consensus 376 sGsGKSTLl~ll~g~~~~~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~Ti~~Ni~~~~~~~~~~~i~~~l~~~~ 455 (578)
T 2hyd_A 376 SGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455 (578)
T ss_dssp TTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 88418999999647888998379999994675767899956211565442588879999627799999999999999819
Q ss_pred C-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5-------664107999825983018889999999999765
Q gi|254780293|r 97 Q-------DNMYDVFATVSGGGLSGQASAICHGVAKALTYF 130 (170)
Q Consensus 97 ~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~ 130 (170)
. ...+|-.+.-.|-.+|| -+.-|++|||||..-
T Consensus 456 l~~~i~~l~~gl~t~i~~~g~~LSg-Gq~Qrl~laRal~~~ 495 (578)
T 2hyd_A 456 AHDFIMNLPQGYDTEVGERGVKLSG-GQKQRLSIARIFLNN 495 (578)
T ss_dssp CHHHHHTSTTGGGCBCCGGGTTSCH-HHHHHHHHHHHHHHC
T ss_pred CHHHHHHCCCCCCCEECCCCCCCCH-HHHHHHHHHHHHHCC
T ss_conf 8589983767668763688885799-999999999999628
No 10
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.15 E-value=5.3 Score=19.04 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHHCCC-----------------HHHH-------------HHHHHHHHHH
Q ss_conf 3111210899999---81897399941008884469-----------------8999-------------9999999873
Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYFTQ-----------------DLLV-------------LNIKRPFNTV 95 (170)
Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~~-----------------~~~r-------------~~i~~Pl~~~ 95 (170)
+|-=||..++..+ .|-+|.|.|||+++.+|-+. .+.+ ..+.+.+..+
T Consensus 37 sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~ 116 (243)
T 1mv5_A 37 SGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA 116 (243)
T ss_dssp TTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 98739999999967876897489999999560999999851489926873576568776412366668999999999997
Q ss_pred CCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 856-------6410799982598301888999999999976
Q gi|254780293|r 96 SQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170)
Q Consensus 96 ~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170)
+.. ..+|-.+.-.|..+|| -+.-|++|||||..
T Consensus 117 ~~~~~i~~~~~~~~~~i~~~g~~LSg-Gq~QrlaiARal~~ 156 (243)
T 1mv5_A 117 FARSFVENMPDQLNTEVGERGVKISG-GQRQRLAIARAFLR 156 (243)
T ss_dssp TCTTTTTSSTTGGGCEESTTSBCCCH-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 84766762755555443788898899-99999999999951
No 11
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=56.64 E-value=3.5 Score=20.11 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=15.7
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6641079998259830188899999
Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~Airla 122 (170)
+.+||..+-|-|||..|-+-|+..+
T Consensus 103 ~~~~dYDvvIIGgGpAGlsAA~~aa 127 (598)
T 2x8g_A 103 ESKYDYDLIVIGGGSGGLAAGKEAA 127 (598)
T ss_dssp CCSSSEEEEEECCSHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 3447888899897889999999999
No 12
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=55.73 E-value=8.1 Score=17.90 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=4.4
Q ss_pred CHHHHHHHHH
Q ss_conf 0188899999
Q gi|254780293|r 113 SGQASAICHG 122 (170)
Q Consensus 113 sgQa~Airla 122 (170)
+|-.+|..||
T Consensus 323 ~ai~DA~~La 332 (535)
T 3ihg_A 323 AAVADGFDLA 332 (535)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 7999999999
No 13
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=55.06 E-value=7.3 Score=18.18 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=4.8
Q ss_pred EEEECCCCCHH
Q ss_conf 99825983018
Q gi|254780293|r 105 ATVSGGGLSGQ 115 (170)
Q Consensus 105 ~~V~GGG~sgQ 115 (170)
+.+-|||..+-
T Consensus 158 v~ivG~g~~~~ 168 (319)
T 3cty_A 158 VVTIGGGNSGA 168 (319)
T ss_dssp EEEECCSHHHH
T ss_pred EEEECCCHHHH
T ss_conf 99996882899
No 14
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=48.21 E-value=8.7 Score=17.69 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=4.0
Q ss_pred CCCCCEEEEEE
Q ss_conf 85664107999
Q gi|254780293|r 96 SQDNMYDVFAT 106 (170)
Q Consensus 96 ~~~~~~Di~~~ 106 (170)
+....|.....
T Consensus 323 g~~~~y~a~~~ 333 (584)
T 2gmh_A 323 GKRIAYGARAL 333 (584)
T ss_dssp CEEEEEEEEEE
T ss_pred CCCEECCCEEC
T ss_conf 64110132012
No 15
>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 1s1i_X 2wwa_N 2ww9_N
Probab=47.92 E-value=9 Score=17.59 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=27.1
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHC
Q ss_conf 82598301888999999999976576344879977
Q gi|254780293|r 107 VSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKG 141 (170)
Q Consensus 107 V~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~ 141 (170)
+.|| -.+....||-.|||.|..+++.-+..|++.
T Consensus 36 ~TG~-~~skIk~vRK~IARvlTVinqkqke~lrk~ 69 (120)
T 2wwb_N 36 LSRP-SLPKIKTVRKSIACVLTVINEQQREAVRQL 69 (120)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9788-807899999999999999849999999999
No 16
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=45.34 E-value=12 Score=16.92 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=40.4
Q ss_pred EECCCEEEEEEE---ECCCCEEEEECCCHHHHCCCH-----------------HHHH------------HHHHHHHHHCC
Q ss_conf 111210899999---818973999410088844698-----------------9999------------99999987385
Q gi|254780293|r 50 GKRKTSIARVWI---KSGSGKFTINYVDISKYFTQD-----------------LLVL------------NIKRPFNTVSQ 97 (170)
Q Consensus 50 GrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~~~-----------------~~r~------------~i~~Pl~~~~~ 97 (170)
|-=||..++..+ .|-+|.|.|||.++.++-... ..++ .+...+..++.
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~g~~~~~~~~~~lr~~i~~V~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 98699999999656657887696777830442699998535897646743556389985045555788888889999999
Q ss_pred -------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf -------66410799982598301888999999999976
Q gi|254780293|r 98 -------DNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170)
Q Consensus 98 -------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170)
...||-.+.-.|-.+|| -+-=|++|||||+.
T Consensus 170 ~~~i~~lp~gl~t~i~~~g~~LSG-GQ~QRlaiARal~~ 207 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSG-GEKQRVAIARTILK 207 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCH-HHHHHHHHHHHHCC
T ss_conf 999985710121254078887899-99999999998655
No 17
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=44.85 E-value=13 Score=16.71 Aligned_cols=12 Identities=17% Similarity=0.828 Sum_probs=4.8
Q ss_pred EEEEC-CCCEEEE
Q ss_conf 99981-8973999
Q gi|254780293|r 59 VWIKS-GSGKFTI 70 (170)
Q Consensus 59 V~l~~-GsG~I~I 70 (170)
+|+.+ +.|.+.|
T Consensus 217 ~~~~~~~~~~~~v 229 (421)
T 3nix_A 217 IWVIPFSNGNTSV 229 (421)
T ss_dssp EEEEECTTSEEEE
T ss_pred EEEEECCCCCEEE
T ss_conf 9998648994588
No 18
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3k7t_A*
Probab=44.81 E-value=12 Score=16.89 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=3.8
Q ss_pred HHHHHHHHCHH
Q ss_conf 99999765763
Q gi|254780293|r 123 VAKALTYFQPD 133 (170)
Q Consensus 123 IarAL~~~~p~ 133 (170)
+..++..+-++
T Consensus 340 ~~~~~~~~l~~ 350 (431)
T 3k7m_X 340 VKDAVLYYLPE 350 (431)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999985232
No 19
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=43.61 E-value=4.9 Score=19.25 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=17.9
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 566410799982598301888999999
Q gi|254780293|r 97 QDNMYDVFATVSGGGLSGQASAICHGV 123 (170)
Q Consensus 97 ~~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170)
....|||.| -|||..|-+-|+.++-
T Consensus 209 ~~~~yDVVI--IGgGPAGlsAA~~lar 233 (521)
T 1hyu_A 209 KRDAYDVLI--VGSGPAGAAAAVYSAR 233 (521)
T ss_dssp TSCCEEEEE--ECCSHHHHHHHHHHHH
T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf 789899899--8879999999999997
No 20
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.42 E-value=10 Score=17.29 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=29.8
Q ss_pred EECCC--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHC----CCCCCCCC
Q ss_conf 82598--301888999999999976576344879977----98335755
Q gi|254780293|r 107 VSGGG--LSGQASAICHGVAKALTYFQPDLRPQIKKG----GFLTRDSR 149 (170)
Q Consensus 107 V~GGG--~sgQa~AirlaIarAL~~~~p~~r~~Lk~~----glLt~D~R 149 (170)
+.||. -.++...+|-.|||.|..+++.-+..|++. .++--|-|
T Consensus 36 ~tg~~~~k~skIr~vRK~IARilTVinekqke~lrk~yk~kk~~P~dLr 84 (123)
T 2zkr_v 36 VTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLR 84 (123)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9757655544999999999999999859999999999858888885334
No 21
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=41.53 E-value=15 Score=16.27 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=9.0
Q ss_pred EEEEECCCCCHHHHHH
Q ss_conf 9998259830188899
Q gi|254780293|r 104 FATVSGGGLSGQASAI 119 (170)
Q Consensus 104 ~~~V~GGG~sgQa~Ai 119 (170)
.+-|-|||..+-..+.
T Consensus 146 ~~~viGg~~~~~~~~~ 161 (310)
T 1fl2_A 146 RVAVIGGGNSGVEAAI 161 (310)
T ss_dssp EEEEECCSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHH
T ss_conf 7999944805655566
No 22
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=41.44 E-value=10 Score=17.23 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=11.6
Q ss_pred EECCCEEEEEEE---ECCCCEEEEECCCHH
Q ss_conf 111210899999---818973999410088
Q gi|254780293|r 50 GKRKTSIARVWI---KSGSGKFTINYVDIS 76 (170)
Q Consensus 50 GrRKtsvArV~l---~~GsG~I~INgk~~~ 76 (170)
|-=|++.+..-+ .|-+|.|.|||.|+.
T Consensus 1069 GSGKSTL~~lL~rl~~p~~G~I~idG~di~ 1098 (1284)
T 3g5u_A 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp STTHHHHHHHHTTSSCCSEEEEESSSSCTT
T ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEEHH
T ss_conf 986999999994687688838999999866
No 23
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N- methylmethionine, post-translational modification; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* 8ruc_A* 1upm_B* ...
Probab=41.11 E-value=14 Score=16.47 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCHH-------HHHHHHHHHHH--------------------HHHHCHHHHHHHHHCCCCCCC
Q ss_conf 07999825983018-------88999999999--------------------976576344879977983357
Q gi|254780293|r 102 DVFATVSGGGLSGQ-------ASAICHGVAKA--------------------LTYFQPDLRPQIKKGGFLTRD 147 (170)
Q Consensus 102 Di~~~V~GGG~sgQ-------a~AirlaIarA--------------------L~~~~p~~r~~Lk~~glLt~D 147 (170)
|+.... |||+.|. +-|+|.|+--| ..+..|+|+..|.+-|-++-|
T Consensus 397 D~il~~-GGGi~gHP~G~aaGa~A~RqA~eA~~~~~~~g~~~a~eg~e~l~~~ak~~peL~~Ale~Wg~~~f~ 468 (477)
T 1wdd_A 397 DSVLQF-GGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFE 468 (477)
T ss_dssp SSEEEC-SHHHHTSTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred EEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEE
T ss_conf 279985-864254897669899999999999998401026566545699999875097999999984763684
No 24
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=38.34 E-value=16 Score=16.13 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred CEEEEEEEECCCCCHH-------HHHHHHHHHHHHH--------HHCHHHHHHHHHCCCCCCC
Q ss_conf 4107999825983018-------8899999999997--------6576344879977983357
Q gi|254780293|r 100 MYDVFATVSGGGLSGQ-------ASAICHGVAKALT--------YFQPDLRPQIKKGGFLTRD 147 (170)
Q Consensus 100 ~~Di~~~V~GGG~sgQ-------a~AirlaIarAL~--------~~~p~~r~~Lk~~glLt~D 147 (170)
+-|+.... |||+.|. +.|+|.|+-.+.. +-.|+|+..|.+-+.-.+|
T Consensus 374 ~~D~i~~~-GGGi~gHP~G~~AGa~A~RqA~eA~~~G~~l~e~Ak~~~eL~~AlekW~~~k~~ 435 (435)
T 1ykw_A 374 NVDFGFVP-GRGVFGHPMGPKAGAKSIRQAWEAIEQGISIETWAETHPELQAMVDQSLLKKQD 435 (435)
T ss_dssp SSCSEECB-SSSSSSCTTCHHHHHHHHHHHHHHHHTTCCHHHHHTTCHHHHHHHHC-------
T ss_pred CCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 96589976-851245883679999999999999984999899862499999999998665259
No 25
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=37.00 E-value=18 Score=15.81 Aligned_cols=12 Identities=58% Similarity=0.819 Sum_probs=4.4
Q ss_pred CCCCCHHHHHHH
Q ss_conf 598301888999
Q gi|254780293|r 109 GGGLSGQASAIC 120 (170)
Q Consensus 109 GGG~sgQa~Air 120 (170)
|+|++|-+-|+.
T Consensus 33 GaG~AGl~AAi~ 44 (447)
T 2i0z_A 33 GGGPSGLMAAIG 44 (447)
T ss_dssp CCSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
T ss_conf 968999999999
No 26
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=34.53 E-value=22 Score=15.22 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=30.1
Q ss_pred EEEEEEECCCCCHH-------HHHHHHHHHHHH--------HHHCHHHHHHHHHCCCCCCC
Q ss_conf 07999825983018-------889999999999--------76576344879977983357
Q gi|254780293|r 102 DVFATVSGGGLSGQ-------ASAICHGVAKAL--------TYFQPDLRPQIKKGGFLTRD 147 (170)
Q Consensus 102 Di~~~V~GGG~sgQ-------a~AirlaIarAL--------~~~~p~~r~~Lk~~glLt~D 147 (170)
|+... -|||+.|. +.|+|.|+-.++ .+-.|+|+..|.+-|++.-|
T Consensus 353 D~i~~-~GGgi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~eL~~Al~~wG~~~~~ 412 (413)
T 2oem_A 353 DTIVN-AGGGIHGHPDGAIGGGRAFRAAIDAVLAGRPLRAAAAENEALQKAIDRWGVVEVE 412 (413)
T ss_dssp SSEEE-ESHHHHTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHHHHHHHCCC---
T ss_pred EEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCEEE
T ss_conf 69997-4752146998748889999999999982999899863299999999985887750
No 27
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=31.94 E-value=24 Score=14.96 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999976
Q gi|254780293|r 118 AICHGVAKALTY 129 (170)
Q Consensus 118 AirlaIarAL~~ 129 (170)
+|..+++|++..
T Consensus 243 ~l~qal~r~~~~ 254 (453)
T 2bcg_G 243 ELPQGFARLSAI 254 (453)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986
No 28
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomic; HET: FAD; 2.15A {Agrobacterium tumefaciens str}
Probab=31.71 E-value=24 Score=14.94 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=11.8
Q ss_pred EEEEEECCCCCHHHHHHH
Q ss_conf 799982598301888999
Q gi|254780293|r 103 VFATVSGGGLSGQASAIC 120 (170)
Q Consensus 103 i~~~V~GGG~sgQa~Air 120 (170)
-.+-|-|||.+|---|..
T Consensus 142 ~~vvViGgG~~g~e~A~~ 159 (297)
T 3fbs_A 142 GKIGVIAASPMAIHHALM 159 (297)
T ss_dssp CEEEEECCSTTHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHH
T ss_conf 879996587469999999
No 29
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=30.71 E-value=25 Score=14.83 Aligned_cols=14 Identities=21% Similarity=-0.038 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88899999999997
Q gi|254780293|r 115 QASAICHGVAKALT 128 (170)
Q Consensus 115 Qa~AirlaIarAL~ 128 (170)
++-++-..+|..++
T Consensus 342 ~ap~~g~~lA~~i~ 355 (372)
T 2uzz_A 342 FASVLGEIAADFAQ 355 (372)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999985
No 30
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=28.41 E-value=28 Score=14.59 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=13.8
Q ss_pred CEEEEEEEECCCCCHHHHHHHH
Q ss_conf 4107999825983018889999
Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICH 121 (170)
Q Consensus 100 ~~Di~~~V~GGG~sgQa~Airl 121 (170)
...=.+.|-|||..|.-.|--+
T Consensus 189 ~~p~~~vviG~G~ig~e~A~~~ 210 (495)
T 2wpf_A 189 EPPRRVLTVGGGFISVEFAGIF 210 (495)
T ss_dssp SCCSEEEEECSSHHHHHHHHHH
T ss_pred HCCCEEEEECCCHHHHHHHHHH
T ss_conf 4887599986364663065899
No 31
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=27.91 E-value=28 Score=14.53 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999999999873856641079998259830188899999999
Q gi|254780293|r 83 LLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAK 125 (170)
Q Consensus 83 ~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIar 125 (170)
..+..++.++.-....-.+|| -|-|||.+|-+-|..++-.|
T Consensus 62 i~~~~~~~~~~~~~~~~~~dv--~vvg~g~~g~~~a~~~~~~~ 102 (344)
T 3jsk_A 62 VSRAMTRRYFADLDAHAETDI--VIVGAGSCGLSAAYVLSTLR 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHHBCSE--EEECCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCCCCCCCCCE--EEECCCHHHHHHHHHHHHHC
T ss_conf 799985441243430156898--99897789999999999748
No 32
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=27.74 E-value=28 Score=14.51 Aligned_cols=12 Identities=33% Similarity=0.399 Sum_probs=7.6
Q ss_pred EEEEECCCCCHH
Q ss_conf 999825983018
Q gi|254780293|r 104 FATVSGGGLSGQ 115 (170)
Q Consensus 104 ~~~V~GGG~sgQ 115 (170)
.+-|-|||.+|-
T Consensus 154 ~v~VvGgG~~g~ 165 (325)
T 2q7v_A 154 KVVVIGGGDAAV 165 (325)
T ss_dssp EEEEECCSHHHH
T ss_pred EEEEECCCHHHH
T ss_conf 899999899999
No 33
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=27.44 E-value=29 Score=14.48 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.9
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 999825983018889
Q gi|254780293|r 104 FATVSGGGLSGQASA 118 (170)
Q Consensus 104 ~~~V~GGG~sgQa~A 118 (170)
.+.|-|||..|-=-|
T Consensus 193 ~vvVIGgG~iG~E~A 207 (484)
T 3o0h_A 193 SIVIVGGGYIGVEFA 207 (484)
T ss_dssp EEEEECCSHHHHHHH
T ss_pred EEEEECCCHHHHHHH
T ss_conf 699999889999999
No 34
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=27.44 E-value=29 Score=14.48 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=7.3
Q ss_pred EEEEECCCCCHHH
Q ss_conf 9998259830188
Q gi|254780293|r 104 FATVSGGGLSGQA 116 (170)
Q Consensus 104 ~~~V~GGG~sgQa 116 (170)
.+.|-|||..+--
T Consensus 156 ~v~v~G~g~~~~~ 168 (323)
T 3f8d_A 156 VVAVIGGGDSALE 168 (323)
T ss_dssp EEEEECCSHHHHH
T ss_pred EEEEECCCHHHHH
T ss_conf 8999878589999
No 35
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=26.30 E-value=18 Score=15.77 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEECCCEEEEEEEECC---CCEEEEECCCHH
Q ss_conf 13111210899999818---973999410088
Q gi|254780293|r 48 ATGKRKTSIARVWIKSG---SGKFTINYVDIS 76 (170)
Q Consensus 48 ~tGrRKtsvArV~l~~G---sG~I~INgk~~~ 76 (170)
+-|||.||.|.|.+.|- .-.|.||..++.
T Consensus 197 ~~~r~hts~~~v~v~P~~~~~~~~~i~~~dl~ 228 (365)
T 2ihr_1 197 ASGRRHTSFAGVEVIPEVDEEVEVVLKPEELR 228 (365)
T ss_dssp SSCCEEEEEEEEEEEEECCSSSSCCCCGGGEE
T ss_pred CCCCEEEEEEEEEEECCCCCHHHHCCCCCCEE
T ss_conf 99972444678999767761132003301115
No 36
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, disulphide bond, oxidoreductase; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus PY2} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
Probab=25.94 E-value=31 Score=14.31 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=9.8
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 999825983018889
Q gi|254780293|r 104 FATVSGGGLSGQASA 118 (170)
Q Consensus 104 ~~~V~GGG~sgQa~A 118 (170)
.+-|-|||..|---|
T Consensus 216 ~vvVIGgG~ig~E~A 230 (523)
T 1mo9_A 216 TVVVVGGSKTAVEYG 230 (523)
T ss_dssp EEEEECCSHHHHHHH
T ss_pred EEEEECCCCCCCEEE
T ss_conf 899988661210300
No 37
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=25.68 E-value=20 Score=15.52 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=10.1
Q ss_pred CEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 41079998259830188899999
Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 100 ~~Di~~~V~GGG~sgQa~Airla 122 (170)
.|||.| -|||.+|-+-|+.++
T Consensus 39 e~DVvV--IGaGpAGL~aA~~La 59 (284)
T 1rp0_A 39 ETDVVV--VGAGSAGLSAAYEIS 59 (284)
T ss_dssp EEEEEE--ECCSHHHHHHHHHHH
T ss_pred CCCEEE--ECCCHHHHHHHHHHH
T ss_conf 899899--897789999999998
No 38
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens} PDB: 2x36_C
Probab=25.66 E-value=31 Score=14.28 Aligned_cols=67 Identities=7% Similarity=-0.040 Sum_probs=31.6
Q ss_pred ECCCCEEEEECCCHHHHCCC-HHHHHHHHHHHHHHCC----CCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 81897399941008884469-8999999999987385----6641079998259830188899999999997
Q gi|254780293|r 62 KSGSGKFTINYVDISKYFTQ-DLLVLNIKRPFNTVSQ----DNMYDVFATVSGGGLSGQASAICHGVAKALT 128 (170)
Q Consensus 62 ~~GsG~I~INgk~~~~Yf~~-~~~r~~i~~Pl~~~~~----~~~~Di~~~V~GGG~sgQa~AirlaIarAL~ 128 (170)
.+|+|++.+.|..-+..-.. ......+..-+.-.+. ...+|+++++..|+..----+.-++|+-||+
T Consensus 42 ~~g~G~l~~tG~~g~~~keS~~~a~~~~k~~~~~~~~~~~~~~~~di~i~~~~~~~~~dGpSaglai~~ai~ 113 (207)
T 2x36_A 42 GDKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALL 113 (207)
T ss_dssp ----CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHCEEEEECCSCBCTTTGGGGHHHHHHHHH
T ss_pred CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 578348999540178888899999999999888747564310022279995688767888731799999999
No 39
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=24.69 E-value=32 Score=14.17 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=12.1
Q ss_pred EEEEEECCCCCHHHHHHH
Q ss_conf 799982598301888999
Q gi|254780293|r 103 VFATVSGGGLSGQASAIC 120 (170)
Q Consensus 103 i~~~V~GGG~sgQa~Air 120 (170)
=.+.|-|||.+|---|..
T Consensus 184 k~vvVIGgG~ig~E~A~~ 201 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSV 201 (478)
T ss_dssp SEEEEECCSHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHH
T ss_conf 879999978999999999
No 40
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=24.64 E-value=27 Score=14.69 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHH--------HHHCHHHHHHHHHCCCC
Q ss_conf 889999999999--------76576344879977983
Q gi|254780293|r 116 ASAICHGVAKAL--------TYFQPDLRPQIKKGGFL 144 (170)
Q Consensus 116 a~AirlaIarAL--------~~~~p~~r~~Lk~~glL 144 (170)
+-|+|.|+--++ .+-.|+|+..|.+-|..
T Consensus 405 a~A~RqA~ea~~~g~~l~e~Ak~~~EL~~Al~~wG~~ 441 (444)
T 3kdn_A 405 ARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHV 441 (444)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCC
T ss_conf 9999999999981999899851398999999972698
No 41
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=23.50 E-value=22 Score=15.19 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEECCCEEEEEEEECCC---CEEEEECCCHH
Q ss_conf 31112108999998189---73999410088
Q gi|254780293|r 49 TGKRKTSIARVWIKSGS---GKFTINYVDIS 76 (170)
Q Consensus 49 tGrRKtsvArV~l~~Gs---G~I~INgk~~~ 76 (170)
-|||-||.|.|++.|-. -.|.||..++.
T Consensus 210 ~gR~HTS~asV~V~P~~~~~~~i~i~~~Dl~ 240 (365)
T 1gqe_A 210 GGRRHTSFSSAFVYPEVDDDIDIEINPADLR 240 (365)
T ss_dssp SCCEEEEEEEEEEEECCBTTBCCCCCGGGEE
T ss_pred CCCEEEEEEEEEEECCCCCCCCEECCHHHEE
T ss_conf 8847986678998257887640431657827
No 42
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=23.48 E-value=34 Score=14.03 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 888999999999976
Q gi|254780293|r 115 QASAICHGVAKALTY 129 (170)
Q Consensus 115 Qa~AirlaIarAL~~ 129 (170)
++-.+-..+|..++.
T Consensus 360 ~ap~~g~~lA~~i~~ 374 (405)
T 2gag_B 360 GTPGAGFTLAHTIAN 374 (405)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999817
No 43
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=23.33 E-value=12 Score=16.87 Aligned_cols=15 Identities=40% Similarity=0.902 Sum_probs=6.3
Q ss_pred EEEEEEEEC-CCCCHH
Q ss_conf 107999825-983018
Q gi|254780293|r 101 YDVFATVSG-GGLSGQ 115 (170)
Q Consensus 101 ~Di~~~V~G-GG~sgQ 115 (170)
||++|.|.| ||.+.+
T Consensus 5 Y~~fC~vTG~~G~~~~ 20 (164)
T 1so9_A 5 YDMFCRVTGYNGTTQR 20 (164)
T ss_dssp ----------------
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 8999998497972651
No 44
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A*
Probab=23.09 E-value=35 Score=13.98 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=15.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 107999825983018889999999
Q gi|254780293|r 101 YDVFATVSGGGLSGQASAICHGVA 124 (170)
Q Consensus 101 ~Di~~~V~GGG~sgQa~AirlaIa 124 (170)
..=.+.+-|||..|--.|..+...
T Consensus 186 ~p~~~~viGgG~ig~e~a~~~~~~ 209 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAY 209 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 776259982364342232322444
No 45
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=22.93 E-value=14 Score=16.50 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=36.0
Q ss_pred EECCCEEEEEE---EECCCCEEEEECCCHHH----------------HCCCHHHHHHHH------------------HHH
Q ss_conf 11121089999---98189739994100888----------------446989999999------------------999
Q gi|254780293|r 50 GKRKTSIARVW---IKSGSGKFTINYVDISK----------------YFTQDLLVLNIK------------------RPF 92 (170)
Q Consensus 50 GrRKtsvArV~---l~~GsG~I~INgk~~~~----------------Yf~~~~~r~~i~------------------~Pl 92 (170)
|-=||...+.. +.|-+|.|.|||+++.. .||+..-.+.|. +-+
T Consensus 47 GsGKSTll~~iaGl~~p~sG~I~i~g~~i~~~~~~~r~ig~vfQ~~~Lfp~ltV~eNi~~~~~~~~~~~~~~~~~~~e~l 126 (372)
T 1v43_A 47 GCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126 (372)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 98599999999749998872999999999989978954468844200273420665202416442765899999999999
Q ss_pred HHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8738566410799982598301888999999999976
Q gi|254780293|r 93 NTVSQDNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170)
Q Consensus 93 ~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170)
..+++....|-.+.--.||. -=|.+|||||+.
T Consensus 127 ~~~~l~~~~~~~p~~LSGGq-----~QRValARaL~~ 158 (372)
T 1v43_A 127 ELLQIEELLNRYPAQLSGGQ-----RQRVAVARAIVV 158 (372)
T ss_dssp HHTTCGGGTTSCTTTCCSSC-----HHHHHHHHHHTT
T ss_pred HHCCCHHHHHCCHHHCCHHH-----HHHHHHHHHHCC
T ss_conf 87798888749945699989-----999999998444
No 46
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=22.69 E-value=35 Score=13.93 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=13.0
Q ss_pred EEEEEEEECCCCCHHHHHHHH
Q ss_conf 107999825983018889999
Q gi|254780293|r 101 YDVFATVSGGGLSGQASAICH 121 (170)
Q Consensus 101 ~Di~~~V~GGG~sgQa~Airl 121 (170)
..=.+-|-|||.+|---|..+
T Consensus 171 ~~k~vvVIGgG~iglE~A~~l 191 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIF 191 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHH
T ss_conf 899899999989999999999
No 47
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=22.44 E-value=36 Score=13.90 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=12.0
Q ss_pred EEEEECCCCCHHHHHHHH
Q ss_conf 999825983018889999
Q gi|254780293|r 104 FATVSGGGLSGQASAICH 121 (170)
Q Consensus 104 ~~~V~GGG~sgQa~Airl 121 (170)
.+.|-|||..|---|.-+
T Consensus 178 ~v~ViGgG~ig~E~A~~l 195 (467)
T 1zk7_A 178 RLAVIGSSVVALELAQAF 195 (467)
T ss_dssp EEEEECCSHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHH
T ss_conf 089989989999876887
No 48
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=22.31 E-value=36 Score=13.88 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=10.4
Q ss_pred EEEEECCCCCHHHHHH
Q ss_conf 9998259830188899
Q gi|254780293|r 104 FATVSGGGLSGQASAI 119 (170)
Q Consensus 104 ~~~V~GGG~sgQa~Ai 119 (170)
.+.|-|||..|---|-
T Consensus 173 ~vvVIGgG~ig~E~A~ 188 (458)
T 1lvl_A 173 HLVVVGGGYIGLELGI 188 (458)
T ss_dssp EEEEECCSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHH
T ss_conf 5999997999999999
No 49
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=21.93 E-value=37 Score=13.84 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.5
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 79998259830188899999
Q gi|254780293|r 103 VFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 103 i~~~V~GGG~sgQa~Airla 122 (170)
=.+.|-|||.+|---|..++
T Consensus 175 k~v~ViGgG~ig~E~A~~l~ 194 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWA 194 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH
T ss_conf 97999998899999999999
No 50
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=21.55 E-value=37 Score=13.79 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.7
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 999825983018889
Q gi|254780293|r 104 FATVSGGGLSGQASA 118 (170)
Q Consensus 104 ~~~V~GGG~sgQa~A 118 (170)
.+.|-|||..|-=-|
T Consensus 168 ~v~ViGgG~ig~E~A 182 (463)
T 2r9z_A 168 RVAIIGAGYIGIELA 182 (463)
T ss_dssp EEEEECCSHHHHHHH
T ss_pred EEEEECCCHHHHHHH
T ss_conf 899999789999999
No 51
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=21.54 E-value=37 Score=13.79 Aligned_cols=12 Identities=42% Similarity=0.401 Sum_probs=7.5
Q ss_pred EEEEECCCCCHH
Q ss_conf 999825983018
Q gi|254780293|r 104 FATVSGGGLSGQ 115 (170)
Q Consensus 104 ~~~V~GGG~sgQ 115 (170)
.+-|-|||..|-
T Consensus 157 ~vvViGgG~~g~ 168 (335)
T 2a87_A 157 DIAVIGGGDSAM 168 (335)
T ss_dssp EEEEECSSHHHH
T ss_pred EEEEECCCHHHH
T ss_conf 999989988999
No 52
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=21.37 E-value=38 Score=13.76 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=12.5
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 9998259830188899999
Q gi|254780293|r 104 FATVSGGGLSGQASAICHG 122 (170)
Q Consensus 104 ~~~V~GGG~sgQa~Airla 122 (170)
.+.|-|||..|---|..++
T Consensus 182 ~vvVvGgG~ig~E~A~~l~ 200 (476)
T 3lad_A 182 KLGVIGAGVIGLELGSVWA 200 (476)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHH
T ss_conf 1499788799999999999
No 53
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=21.21 E-value=38 Score=13.74 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=5.6
Q ss_pred ECCCCEEEEEC
Q ss_conf 81897399941
Q gi|254780293|r 62 KSGSGKFTINY 72 (170)
Q Consensus 62 ~~GsG~I~INg 72 (170)
.+..|.+.+=+
T Consensus 262 ~~~~g~~~~G~ 272 (382)
T 1ryi_A 262 PRKSGRLVVGA 272 (382)
T ss_dssp ECTTSEEEEEC
T ss_pred ECCCCCEEECC
T ss_conf 71588388713
No 54
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8}
Probab=20.81 E-value=39 Score=13.69 Aligned_cols=14 Identities=29% Similarity=0.314 Sum_probs=9.2
Q ss_pred EEEEEEECCCCCHH
Q ss_conf 07999825983018
Q gi|254780293|r 102 DVFATVSGGGLSGQ 115 (170)
Q Consensus 102 Di~~~V~GGG~sgQ 115 (170)
+=.+-|-|||.++-
T Consensus 152 ~k~v~viG~G~~a~ 165 (335)
T 2zbw_A 152 GKRVLIVGGGDSAV 165 (335)
T ss_dssp TCEEEEECSSHHHH
T ss_pred CCEEEEEEECHHHH
T ss_conf 98799994499999
No 55
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=20.60 E-value=39 Score=13.66 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=13.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999825983018889999999999765
Q gi|254780293|r 104 FATVSGGGLSGQASAICHGVAKALTYF 130 (170)
Q Consensus 104 ~~~V~GGG~sgQa~AirlaIarAL~~~ 130 (170)
.+.+.||++|.= -++.--+...+..+
T Consensus 347 lisi~GgklTt~-r~mAe~vvd~v~~~ 372 (501)
T 2qcu_A 347 LLSVFGGKLTTY-RKLAEHALEKLTPY 372 (501)
T ss_dssp EEEEECCCGGGH-HHHHHHHHHHHGGG
T ss_pred EEEECCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 578526611148-99999999999986
No 56
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=20.38 E-value=40 Score=13.64 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=33.4
Q ss_pred ECCCCEEEEECCCHHHHCCCHHHHHHHHHHHH-HHCC-CCCEEEEEEEECCCC--CHHHH--HHHHHHHHHH
Q ss_conf 81897399941008884469899999999998-7385-664107999825983--01888--9999999999
Q gi|254780293|r 62 KSGSGKFTINYVDISKYFTQDLLVLNIKRPFN-TVSQ-DNMYDVFATVSGGGL--SGQAS--AICHGVAKAL 127 (170)
Q Consensus 62 ~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~-~~~~-~~~~Di~~~V~GGG~--sgQa~--AirlaIarAL 127 (170)
.+|.|.+.+.|...+.. . + ....++.-+. .++. ...+||++++.+|.. .|.+- |+.+||.=++
T Consensus 40 ~~g~g~~~~tg~~~~~~-~-e-s~~~a~a~l~~~~~~~~~~~di~i~~~~~~~~~~GpSa~laia~ai~Sa~ 108 (207)
T 1z0w_A 40 SKSEGRVIATGRLQEIA-R-E-AVMNVSAIIKKYTGRDISNMDVHIQFVGTYEGVEGDSASISIATAVISAI 108 (207)
T ss_dssp ---CCCEECCSTTHHHH-H-H-HHHHHHHHHHHHHCCCGGGEEEEEEESSCCTTEECCTTBHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHH-H-H-HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 37877299817547889-9-9-99999999998524575566499996687566778752699999999984
Done!