RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)



>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score =  156 bits (396), Expect = 1e-39
 Identities = 60/124 (48%), Positives = 83/124 (66%)

Query: 47  YATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFAT 106
           Y TG+RK+S ARV+IK G+GK  IN   + +YF ++   + +++P   V      D++ T
Sbjct: 3   YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62

Query: 107 VSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQ 166
           V GGG+SGQA AI HG+ +AL  +   LR +++K GF+TRD+R VERKK G  KARR  Q
Sbjct: 63  VKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQ 122

Query: 167 FSKR 170
           FSKR
Sbjct: 123 FSKR 126


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score =  153 bits (387), Expect = 9e-39
 Identities = 60/124 (48%), Positives = 83/124 (66%)

Query: 47  YATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFAT 106
           Y TG+RK ++ARV+++ G+GK T+N  D ++YF   +  +    P   V     +D + T
Sbjct: 4   YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63

Query: 107 VSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQ 166
           V GGG SGQ  AI  G+A+AL  + PD R ++K  GFLTRD+R+VERKKYGK KARR+ Q
Sbjct: 64  VRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQ 123

Query: 167 FSKR 170
           +SKR
Sbjct: 124 YSKR 127


>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
           (Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
          Length = 544

 Score = 25.1 bits (53), Expect = 3.5
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 82  DLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122
           D L LN+ RP  T   D    V   + GG     +SA   G
Sbjct: 104 DCLYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPG 143


>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
           {Thermotoga maritima [TaxId: 2336]}
          Length = 120

 Score = 24.6 bits (53), Expect = 4.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 58  RVWIKSGSGKFTINYVDISKY 78
            + I SGS  F I  +   ++
Sbjct: 95  ALVISSGSTVFRITTMPADEF 115


>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
          (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
          Length = 334

 Score = 24.3 bits (52), Expect = 5.1
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 11 IEQQGGTLTEENTSQPEETSSSPAIHSRKVDQWQRSYATGKRK 53
          + ++  TL EEN  + +      +  +     + +S+   + K
Sbjct: 1  LNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHK 43


>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit
           {Escherichia coli [TaxId: 562]}
          Length = 122

 Score = 24.1 bits (52), Expect = 5.9
 Identities = 4/21 (19%), Positives = 14/21 (66%)

Query: 58  RVWIKSGSGKFTINYVDISKY 78
           R+ ++SG  +F+++ +  + +
Sbjct: 96  RMLVRSGRSRFSLSTLPAADF 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,592
Number of extensions: 26556
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 8
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)