HHsearch alignment for GI: 254780294 and conserved domain: COG0771

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=92.15  E-value=0.86  Score=24.13  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----------CCCC-----CHHHHCCCCEEEECCCCHHHHH
Q ss_conf             90799975886789999999862997289999653007-----------8600-----6677479989999389837899
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----------NLRY-----REDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----------g~~~-----~~~~~~~~Divf~a~p~~~s~~   64 (311)
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             CCEEEEEEC-CCCCHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCCCCH
T ss_conf             997999926-651099999999779-869998389876532344442037223137641100134778998999999888


Q ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf             9999861258489822763035554311
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss~~R~~~~vp   92 (311)
T Consensus        85 ~v~~A~~~gi~-i~~dieL~~r~~~~~p  111 (448)
T COG0771          85 LVEAAKAAGIE-IIGDIELFYRLSGEAP  111 (448)
T ss_pred             HHHHHHHCCCC-EEEHHHHHHHHCCCCC
T ss_conf             99999986993-7748888987448999