HHsearch alignment for GI: 254780294 and conserved domain: COG2344

>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=96.76  E-value=0.0067  Score=37.19  Aligned_cols=74  Identities=15%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEE-ECC-CCCCCCCCH----------H--HHCCCCEEEECCCCHHHHHH
Q ss_conf             9079997588678999999986-2997289999-653-007860066----------7--74799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSI-PCE-ERHNLRYRE----------D--LLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l-~s~-~~ag~~~~~----------~--~~~~~Divf~a~p~~~s~~~   65 (311)
T Consensus        84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v  162 (211)
T COG2344          84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV  162 (211)
T ss_pred             CEEEEEECC-CHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf             034899905-7088898607423326935999961787883752488145526888889886176189997348989999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9998612584
Q gi|254780294|r   66 IQLIKKNGIN   75 (311)
Q Consensus        66 ~~~~~~~g~~   75 (311)
T Consensus       163 ad~Lv~aGVk  172 (211)
T COG2344         163 ADRLVKAGVK  172 (211)
T ss_pred             HHHHHHCCCC
T ss_conf             9999983873