HHsearch alignment for GI: 254780294 and conserved domain: COG2344
>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=96.76 E-value=0.0067 Score=37.19 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=57.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEE-ECC-CCCCCCCCH----------H--HHCCCCEEEECCCCHHHHHH
Q ss_conf 9079997588678999999986-2997289999-653-007860066----------7--74799899993898378999
Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSI-PCE-ERHNLRYRE----------D--LLNAADVSILCLPDVASLEI 65 (311)
Q Consensus 1 M~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l-~s~-~~ag~~~~~----------~--~~~~~Divf~a~p~~~s~~~ 65 (311)
T Consensus 84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v 162 (211)
T COG2344 84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV 162 (211)
T ss_pred CEEEEEECC-CHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 034899905-7088898607423326935999961787883752488145526888889886176189997348989999
Q ss_pred HHHHHHCCCC
Q ss_conf 9998612584
Q gi|254780294|r 66 IQLIKKNGIN 75 (311)
Q Consensus 66 ~~~~~~~g~~ 75 (311)
T Consensus 163 ad~Lv~aGVk 172 (211)
T COG2344 163 ADRLVKAGVK 172 (211)
T ss_pred HHHHHHCCCC
T ss_conf 9999983873