HHsearch alignment for GI: 254780294 and conserved domain: PRK02006

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.00  E-value=0.45  Score=25.84  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------C-------CCCCHHHHCCCCEEEECCCC----H
Q ss_conf             90799975886789999999862997289999653007---------8-------60066774799899993898----3
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------N-------LRYREDLLNAADVSILCLPD----V   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g-------~~~~~~~~~~~Divf~a~p~----~   60 (311)
T Consensus         7 ~k~vlV~Gl-G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p   84 (501)
T PRK02006          7 RPMVLVLGL-GESGLAMARWCARH-GCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP   84 (501)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC
T ss_conf             983999833-68899999999978-9849999899998619999860898189778898678468999998990088885


Q ss_pred             HHHHHHHHHHHCCCCEEEE-CCCCCHHHHH
Q ss_conf             7899999986125848982-2763035554
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRII-DTSTAHRIAP   89 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~   89 (311)
T Consensus        85 ~~~~~l~~A~~~gi~--i~~eiel~~~~~~  112 (501)
T PRK02006         85 ALAALLAAARERGIP--VWGELELFAQALA  112 (501)
T ss_pred             CHHHHHHHHHHCCCC--EEEHHHHHHHHHH
T ss_conf             431999999987995--8768999998876