HHsearch alignment for GI: 254780294 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.20 E-value=0.61 Score=25.05 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=56.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 0799975886789999999862997289999653007-------860-----0667747998999938983789999998
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLR-----YREDLLNAADVSILCLPDVASLEIIQLI 69 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311)
T Consensus 13 k~V~V~Gl-G~sG~a~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~~a 90 (487)
T PRK03369 13 APVLVAGA-GVTGRAVLAALTRF-GARPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPPTAPVLAAA 90 (487)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 98999915-68389999999978-69799998982577999865994863762265646778899899579989999999
Q ss_pred HHCCCCEEEE-CCCCCHHHHHH
Q ss_conf 6125848982-27630355543
Q gi|254780294|r 70 KKNGINSRII-DTSTAHRIAPG 90 (311)
Q Consensus 70 ~~~g~~~~vi-d~ss~~R~~~~ 90 (311)
T Consensus 91 ~~~gi~--i~~eieL~~~~~~~ 110 (487)
T PRK03369 91 AAAGVP--IWGDVELAWRLDAA 110 (487)
T ss_pred HHCCCC--EEEHHHHHHHHHHC
T ss_conf 988990--76599999998744