HHsearch alignment for GI: 254780294 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=90.66 E-value=1.2 Score=23.18 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 90799975886789999999862997289999653007860066774799899993--8983789999998612584898
Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRI 78 (311)
Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~v 78 (311)
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~V 80 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985899819
Q ss_pred ECCCCC
Q ss_conf 227630
Q gi|254780294|r 79 IDTSTA 84 (311)
Q Consensus 79 id~ss~ 84 (311)
T Consensus 81 I~ITa~ 86 (239)
T PRK10430 81 IVISSA 86 (239)
T ss_pred EEEEEC
T ss_conf 999726