HHsearch alignment for GI: 254780294 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.11 E-value=0.43 Score=25.98 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=51.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCC---------CCC-------C-----HHHHCCCCEEEECCCC
Q ss_conf 0799975886789999999862-9972899996530078---------600-------6-----6774799899993898
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ-RKDLCLLSIPCEERHN---------LRY-------R-----EDLLNAADVSILCLPD 59 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~-hp~~~l~~l~s~~~ag---------~~~-------~-----~~~~~~~Divf~a~p~ 59 (311)
T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaAA~ 84 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAAL 84 (324)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCC
T ss_conf 99999079779999999999972998289996686403288985168987599967777889999763488899994627
Q ss_pred -HH-----------------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
Q ss_conf -37-----------------899999986125848982276303555431100
Q gi|254780294|r 60 -VA-----------------SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG 94 (311)
Q Consensus 60 -~~-----------------s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~ 94 (311)
T Consensus 85 khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vk-k~V~iSTDka~~P~n~yG 136 (324)
T TIGR03589 85 KQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAANPINLYG 136 (324)
T ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCC
T ss_conf 7672677698999999979999999998855543-178622688889967431