HHsearch alignment for GI: 254780294 and conserved domain: cd01078
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.72 E-value=0.06 Score=31.29 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=50.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC--------CC--------------CHHHHCCCCEEEECCCC
Q ss_conf 079997588678999999986299728999965300786--------00--------------66774799899993898
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL--------RY--------------REDLLNAADVSILCLPD 59 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~--------~~--------------~~~~~~~~Divf~a~p~ 59 (311)
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~-Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adiV~~a~aA 107 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHH
T ss_conf 88999858857899999999983-99799995878889999999999709873113578877899774669899964277
Q ss_pred HHHHHHHH-HHHHCCCCEEEECCCC
Q ss_conf 37899999-9861258489822763
Q gi|254780294|r 60 VASLEIIQ-LIKKNGINSRIIDTST 83 (311)
Q Consensus 60 ~~s~~~~~-~~~~~g~~~~vid~ss 83 (311)
T Consensus 108 Gv~~~~~~~~~~k~l--~Vv~DVNA 130 (194)
T cd01078 108 GVELLEKLAWAPKPL--AVAADVNA 130 (194)
T ss_pred HHHHHHHHHHCCCCC--EEEEECCC
T ss_conf 788878888508886--59986589