HHsearch alignment for GI: 254780294 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.59 E-value=0.00087 Score=42.67 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=55.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CCCCC--------------HHHHCCCCEEEECCCCHHHHH
Q ss_conf 0799975886789999999862997289999653007---86006--------------677479989999389837899
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NLRYR--------------EDLLNAADVSILCLPDVASLE 64 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~~~~--------------~~~~~~~Divf~a~p~~~s~~ 64 (311)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvIDFS~p~~~~~ 80 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLIDFTTPEATLE 80 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCHHHHHH
T ss_conf 98999889887899999999858996899999438961225431001467871112447775157888999068789999
Q ss_pred HHHHHHHCCCCEEEECCC
Q ss_conf 999986125848982276
Q gi|254780294|r 65 IIQLIKKNGINSRIIDTS 82 (311)
Q Consensus 65 ~~~~~~~~g~~~~vid~s 82 (311)
T Consensus 81 ~~~~~~~~~~~-~ViGTT 97 (122)
T pfam01113 81 NLELALKHGKP-LVIGTT 97 (122)
T ss_pred HHHHHHHCCCC-EEEECC
T ss_conf 99999967998-899899