HHsearch alignment for GI: 254780294 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=96.78 E-value=0.0032 Score=39.15 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=57.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CC--------CCC-----CC--HHHHCCCCEEEECCCCHH---H
Q ss_conf 07999758867899999998629972899996530-07--------860-----06--677479989999389837---8
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RH--------NLR-----YR--EDLLNAADVSILCLPDVA---S 62 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~a--------g~~-----~~--~~~~~~~Divf~a~p~~~---s 62 (311)
T Consensus 13 ~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~~ii~ 91 (134)
T pfam01488 13 KKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPTPIIT 91 (134)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCCCEEC
T ss_conf 98999996-09999999999975998899954757899999998499725898513544136319999992599973648
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 999999861258489822763035554311
Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWV 92 (311)
Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~vp 92 (311)
T Consensus 92 ~~~~~~---~~~~~~iiDLavPrnvd~~v~ 118 (134)
T pfam01488 92 KEMVEE---ALKGLLFVDIAVPRDIEPEVG 118 (134)
T ss_pred HHHHHH---CCCCEEEEEECCCCCCCHHHC
T ss_conf 999974---439859998347888665454