HHsearch alignment for GI: 254780295 and conserved domain: COG1258
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis].
Probab=91.90 E-value=0.34 Score=27.15 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCCCHHHHHHHHHHH-HHCCCEEEEECCCCCCCCEEEEE----EEEEEEC--CCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 387788999999999-70995699971121386122234----6886406--3211046899999861888765434432
Q gi|254780295|r 23 NGSSIQGSIEKAIFL-VTGEIVVVHGAGRTDSGVHALRQ----VAHFDLV--REWVPVILCKALNAYLKISDTISILNLS 95 (247)
Q Consensus 23 ~~~TVq~~le~aL~~-~~~~~~~~~~a~RTD~GVhA~~q----v~~f~~~--~~~~~~~~~~~lN~~L~~p~~Irv~~~~ 95 (247)
T Consensus 189 ~~~sve~~i~~~~~~~f~g~~~~fhgAGREDvDvRMLG~GRPfVlEvk~Pr~R~~dl~~l~~~in~~~----~vev~~l~ 264 (398)
T COG1258 189 YPESVEELIKQPIKEAFGGLDAKFHGAGREDVDVRMLGTGRPFVLEVKEPRRRNVDLDELEEEINRGG----KVEVFDLE 264 (398)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHCCCC----CEEEEEEE
T ss_conf 64419999878999860685069971687766346605898369992374225688678899763588----58999877
Q ss_pred CCCCCCCCEE---CCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CHHEEEECCCC--CCCCCCC
Q ss_conf 2677755000---2100223556852443202333210244333335665565676520-01100102456--5533321
Q gi|254780295|r 96 IVDKQFHARF---SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIH--CQASSPI 169 (247)
Q Consensus 96 ~v~~~FhaR~---~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G-~HdF~~F~~~~--~~~~~~~ 169 (247)
T Consensus 265 f~~~e~v~~ik~~~~~rK~YrAlV~---------------~~~~v~~e~l~~~~~~L~g~~I~QrTP~RV~hrRadlvR~ 329 (398)
T COG1258 265 FVGREEVEEIKETERHRKVYRALVY---------------SDRPVSDEKLEEVLGSLEGKTIRQRTPRRVLHRRADLVRI 329 (398)
T ss_pred ECCHHHHHHHHHCCCCCEEEEEEEE---------------ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCEE
T ss_conf 4479999998740342006899999---------------7798689999999742357678613927876641120147
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 10331111233-32001131588889
Q gi|254780295|r 170 RTIDHFDVNSF-GNLIEIRVVARSFL 194 (247)
Q Consensus 170 R~I~~~~v~~~-~~~i~i~i~g~~FL 194 (247)
T Consensus 330 R~V~~l~~~~~~~~~~~~~i~~egGl 355 (398)
T COG1258 330 RRVYELSLDLIDDRHAELEIEAEGGL 355 (398)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 88998533660684699999941540