HHsearch alignment of GI: 254780295 and MMDB domain: 1vs3_A_
>1vs3_A (A:) TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=525.39 Aligned_cols=244 Identities=35% Similarity=0.536 Sum_probs=234.7
Q ss_pred CCEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 922999999716687200487538-7788999999999709956999711213861222346886406321104689999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~-~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l 79 (247)
|.||++.|+||||+|+|||+||+. +|||++||+||.++ +..+++.+|||||+||||++|+++|+++.++++..+...+
T Consensus 1 M~~~~l~i~Y~Gt~f~G~q~q~~~~~TVq~~le~aL~~~-~~~~~~~~agRTD~GVhA~~qv~~~~~~~~~~~~~~~~~l 79 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL 79 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG-TBCSCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH
T ss_pred CCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHH-CCCCEEEEEEEECCCCCHHEEEEEEECCCCCCCHHCHHHH
T ss_conf 948999999979980177588999988999999999982-6851688763100231100024456113233310010110
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf 98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 (247)
Q Consensus 80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~ 159 (247)
|..| |+||+|+++.+|+++||||++|++|+|+|+|+++..++++...+.|+..+++|+++|++||+.|+|+|||++||
T Consensus 80 n~~L--p~~I~i~~~~~v~~~F~ar~~~~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~HdF~~F~ 157 (249)
T 1vs3_A 80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA 157 (249)
T ss_dssp HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC
T ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1459--95322542220143113212334352256886167899556066421223045899999999829945100123
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4565533321103311112--33320011315888899999999999999976899888999998358821166636989
Q gi|254780295|r 160 SIHCQASSPIRTIDHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 (247)
Q Consensus 160 ~~~~~~~~~~R~I~~~~v~--~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~ 237 (247)
+.+++.+++.|++..+++. ..++++.++|+|+||||+|||+|||+|+++|+|++++++|+++|+++++...+|+|||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~~~~~~~~APa~ 237 (249)
T 1vs3_A 158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 (249)
T ss_dssp SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 45656886315788741111444332479997146898889999999999977999999999998768855585736997
Q ss_pred CCEEEEEEEC
Q ss_conf 8476330439
Q gi|254780295|r 238 GLYFDSVEYS 247 (247)
Q Consensus 238 GL~L~~V~Y~ 247 (247)
||+|++|.|.
T Consensus 238 GL~L~~v~Y~ 247 (249)
T 1vs3_A 238 GLYFVEAAYP 247 (249)
T ss_dssp GEEEEEEECC
T ss_pred CCEECCCCCC
T ss_conf 7788953788