HHsearch alignment of GI: 254780295 and MMDB domain: 1vs3_A_

>1vs3_A (A:) TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=525.39  Aligned_cols=244  Identities=35%  Similarity=0.536  Sum_probs=234.7

Q ss_pred             CCEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             922999999716687200487538-7788999999999709956999711213861222346886406321104689999
Q gi|254780295|r    1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL   79 (247)
Q Consensus         1 M~r~~~~i~YdGt~y~G~q~Q~~~-~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l   79 (247)
                      |.||++.|+||||+|+|||+||+. +|||++||+||.++ +..+++.+|||||+||||++|+++|+++.++++..+...+
T Consensus         1 M~~~~l~i~Y~Gt~f~G~q~q~~~~~TVq~~le~aL~~~-~~~~~~~~agRTD~GVhA~~qv~~~~~~~~~~~~~~~~~l   79 (249)
T 1vs3_A            1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL   79 (249)
T ss_dssp             CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG-TBCSCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH
T ss_pred             CCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHH-CCCCEEEEEEEECCCCCHHEEEEEEECCCCCCCHHCHHHH
T ss_conf             948999999979980177588999988999999999982-6851688763100231100024456113233310010110


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf             98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r   80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR  159 (247)
Q Consensus        80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~  159 (247)
                      |..|  |+||+|+++.+|+++||||++|++|+|+|+|+++..++++...+.|+..+++|+++|++||+.|+|+|||++||
T Consensus        80 n~~L--p~~I~i~~~~~v~~~F~ar~~~~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~HdF~~F~  157 (249)
T 1vs3_A           80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA  157 (249)
T ss_dssp             HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC
T ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCC
T ss_conf             1459--95322542220143113212334352256886167899556066421223045899999999829945100123


Q ss_pred             CCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             4565533321103311112--33320011315888899999999999999976899888999998358821166636989
Q gi|254780295|r  160 SIHCQASSPIRTIDHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE  237 (247)
Q Consensus       160 ~~~~~~~~~~R~I~~~~v~--~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~  237 (247)
                      +.+++.+++.|++..+++.  ..++++.++|+|+||||+|||+|||+|+++|+|++++++|+++|+++++...+|+|||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~~~~~~~~APa~  237 (249)
T 1vs3_A          158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH  237 (249)
T ss_dssp             SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             45656886315788741111444332479997146898889999999999977999999999998768855585736997


Q ss_pred             CCEEEEEEEC
Q ss_conf             8476330439
Q gi|254780295|r  238 GLYFDSVEYS  247 (247)
Q Consensus       238 GL~L~~V~Y~  247 (247)
                      ||+|++|.|.
T Consensus       238 GL~L~~v~Y~  247 (249)
T 1vs3_A          238 GLYFVEAAYP  247 (249)
T ss_dssp             GEEEEEEECC
T ss_pred             CCEECCCCCC
T ss_conf             7788953788