HHsearch results for GI: 254780295 and protein with PDBid: 1vs3_A
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=535.13 Aligned_cols=244 Identities=34% Similarity=0.504 Sum_probs=228.0
Q ss_pred CCEEEEEEEECCCCCEEEEECCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 92299999971668720048753-87788999999999709956999711213861222346886406321104689999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~-~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l 79 (247)
|.||++.|+||||+|+|||+||+ .+|||++||+||.++.++ +.+.+|||||+||||++|+++|+++.+++++.+..++
T Consensus 1 M~r~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~~~~-~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~l~~~l 79 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGAL-PKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL 79 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGGTBC-SCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH
T ss_pred CCEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
T ss_conf 937999999979981142057999989899999999982485-3256745666883375305012023456555611324
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf 98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 (247)
Q Consensus 80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~ 159 (247)
|+.| |+||+|+++.+|+++||||++|++|+|+|++.++..++++.+++.|+++.+||+++|++|++.|+|+|||++||
T Consensus 80 N~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HdF~~F~ 157 (249)
T 1vs3_A 80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA 157 (249)
T ss_dssp HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC
T ss_pred HHCC--CCCCEECCCEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 4129--98647622124487405010067337898983467899678266531134556799999998607840547761
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 45655333211033111123--3320011315888899999999999999976899888999998358821166636989
Q gi|254780295|r 160 SIHCQASSPIRTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 (247)
Q Consensus 160 ~~~~~~~~~~R~I~~~~v~~--~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~ 237 (247)
+.+++..+..+++..+.+.. .++.+.|+|+|+||||||||+|||+|+++|+|++++++|+++|++++|...+|+|||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~FL~~qVR~mvg~l~~vg~g~~~~~~i~~~l~~~~r~~~~~~APa~ 237 (249)
T 1vs3_A 158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 (249)
T ss_dssp SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88878996436789988874133222257885776899999999999999977999999999998668855586866997
Q ss_pred CCEEEEEEEC
Q ss_conf 8476330439
Q gi|254780295|r 238 GLYFDSVEYS 247 (247)
Q Consensus 238 GL~L~~V~Y~ 247 (247)
||||++|+|.
T Consensus 238 GL~L~~V~Yp 247 (249)
T 1vs3_A 238 GLYFVEAAYP 247 (249)
T ss_dssp GEEEEEEECC
T ss_pred CCEECCCCCC
T ss_conf 7788943788