Query gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 247 No_of_seqs 126 out of 3058 Neff 7.3 Searched_HMMs 23785 Date Mon May 30 08:20:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780295.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1dj0_A Pseudouridine synthase 100.0 0 0 542.1 16.2 245 1-247 3-247 (264) 2 1vs3_A TRNA pseudouridine synt 100.0 0 0 535.1 13.1 244 1-247 1-247 (249) 3 2v9k_A Uncharacterized protein 72.3 4.9 0.0002 19.2 5.6 148 24-191 316-482 (530) 4 2jvf_A De novo protein M7; tet 34.3 23 0.00095 15.3 2.9 51 4-54 8-61 (96) 5 1u02_A Trehalose-6-phosphate p 30.9 26 0.0011 15.0 2.9 50 5-55 3-52 (239) 6 1qys_A TOP7; alpha-beta, novel 29.7 27 0.0011 14.8 2.8 50 5-54 7-59 (106) 7 1l5a_A Amide synthase, VIBH; n 26.0 22 0.00092 15.4 1.4 13 210-222 308-320 (436) 8 2l09_A ASR4154 protein; proto- 23.3 36 0.0015 14.1 2.4 32 191-222 17-49 (62) 9 2hh8_A Hypothetical protein YD 19.5 31 0.0013 14.5 1.1 32 131-162 68-100 (149) 10 3f9r_A Phosphomannomutase; try 13.5 61 0.0026 12.8 3.3 45 1-51 2-47 (246) No 1 >1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A Probab=100.00 E-value=0 Score=542.11 Aligned_cols=245 Identities=37% Similarity=0.573 Sum_probs=239.6 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHH Q ss_conf 92299999971668720048753877889999999997099569997112138612223468864063211046899999 Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 (247) Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN 80 (247) |.||++.|+||||+|+|||+||+.+||||+||+||.+++++++.+.+|||||+||||++||+||+++...+.+.+...|| T Consensus 3 ~~r~~l~i~Y~Gt~y~G~Q~Q~~~~TVq~~Le~aL~~~~~~~i~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~ln 82 (264) T 1dj0_A 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVN 82 (264) T ss_dssp CEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCCCCHHHHHHHHH T ss_pred CEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH T ss_conf 47999999997987216658889969999999999997399738998678857837050168988312114688988887 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC Q ss_conf 86188876543443226777550002100223556852443202333210244333335665565676520011001024 Q gi|254780295|r 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 (247) Q Consensus 81 ~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~ 160 (247) +.| |+||+|+++.+|+++||||++|++|+|+|+++++..++++.+.+.|+...++|+++|++|++.|+|+|||++||+ T Consensus 83 ~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HdF~~F~~ 160 (264) T 1dj0_A 83 ANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA 160 (264) T ss_dssp HTS--CTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCC T ss_pred HCC--CCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEC T ss_conf 309--824788554205998660103787999987644756864440243356766788999999997768577575330 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE Q ss_conf 56553332110331111233320011315888899999999999999976899888999998358821166636989847 Q gi|254780295|r 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 (247) Q Consensus 161 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 240 (247) .+++.++++|++..+++.+.++++.|+|+|+||||||||+|||+|++||+|++++++|+++|+.+++...+++|||+||+ T Consensus 161 ~~~~~~~~~r~i~~~~~~~~~~~i~~~i~g~sFL~~qVR~mVg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 240 (264) T 1dj0_A 161 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 240 (264) T ss_dssp TTCCCSCCEEEEEEEEEEEETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEE T ss_pred CCCCCCCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE T ss_conf 56678887642057889973868999998337799999999999999987999999999998668866686645898767 Q ss_pred EEEEEEC Q ss_conf 6330439 Q gi|254780295|r 241 FDSVEYS 247 (247) Q Consensus 241 L~~V~Y~ 247 (247) |++|+|. T Consensus 241 L~~V~Y~ 247 (264) T 1dj0_A 241 LVAVDYP 247 (264) T ss_dssp EEEEECC T ss_pred ECCCCCC T ss_conf 8543378 No 2 >1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=535.13 Aligned_cols=244 Identities=34% Similarity=0.504 Sum_probs=228.0 Q ss_pred CCEEEEEEEECCCCCEEEEECCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH Q ss_conf 92299999971668720048753-87788999999999709956999711213861222346886406321104689999 Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 (247) Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~-~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l 79 (247) |.||++.|+||||+|+|||+||+ .+|||++||+||.++.++ +.+.+|||||+||||++|+++|+++.+++++.+..++ T Consensus 1 M~r~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~~~~-~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~l~~~l 79 (249) T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGAL-PKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL 79 (249) T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGGTBC-SCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH T ss_pred CCEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHH T ss_conf 937999999979981142057999989899999999982485-3256745666883375305012023456555611324 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC Q ss_conf 98618887654344322677755000210022355685244320233321024433333566556567652001100102 Q gi|254780295|r 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 (247) Q Consensus 80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~ 159 (247) |+.| |+||+|+++.+|+++||||++|++|+|+|++.++..++++.+++.|+++.+||+++|++|++.|+|+|||++|| T Consensus 80 N~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HdF~~F~ 157 (249) T 1vs3_A 80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA 157 (249) T ss_dssp HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC T ss_pred HHCC--CCCCEECCCEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH T ss_conf 4129--98647622124487405010067337898983467899678266531134556799999998607840547761 Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 45655333211033111123--3320011315888899999999999999976899888999998358821166636989 Q gi|254780295|r 160 SIHCQASSPIRTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 (247) Q Consensus 160 ~~~~~~~~~~R~I~~~~v~~--~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~ 237 (247) +.+++..+..+++..+.+.. .++.+.|+|+|+||||||||+|||+|+++|+|++++++|+++|++++|...+|+|||+ T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~FL~~qVR~mvg~l~~vg~g~~~~~~i~~~l~~~~r~~~~~~APa~ 237 (249) T 1vs3_A 158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 (249) T ss_dssp SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 88878996436789988874133222257885776899999999999999977999999999998668855586866997 Q ss_pred CCEEEEEEEC Q ss_conf 8476330439 Q gi|254780295|r 238 GLYFDSVEYS 247 (247) Q Consensus 238 GL~L~~V~Y~ 247 (247) ||||++|+|. T Consensus 238 GL~L~~V~Yp 247 (249) T 1vs3_A 238 GLYFVEAAYP 247 (249) T ss_dssp GEEEEEEECC T ss_pred CCEECCCCCC T ss_conf 7788943788 No 3 >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} Probab=72.27 E-value=4.9 Score=19.15 Aligned_cols=148 Identities=16% Similarity=0.270 Sum_probs=80.6 Q ss_pred CCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCEEEEE--EEEEEECCC----C---CCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8778899999999970-995699971121386122234--688640632----1---10468999998618887654344 Q gi|254780295|r 24 GSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ--VAHFDLVRE----W---VPVILCKALNAYLKISDTISILN 93 (247) Q Consensus 24 ~~TVq~~le~aL~~~~-~~~~~~~~a~RTD~GVhA~~q--v~~f~~~~~----~---~~~~~~~~lN~~L~~p~~Irv~~ 93 (247) ..|||+.|.+.+...+ +....+.+|||-|.-|--+|. .+.+++..+ . +...+...+|.- .+.|.|.+ T Consensus 316 ~~SVee~I~~~i~~~f~~~~~~fh~sGREDiDVRmLG~GRPFv~Ei~nP~r~~~~~~~l~~l~~~iN~~---~~~V~v~~ 392 (530) T 2v9k_A 316 ESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNS---SNKIQVRD 392 (530) T ss_dssp SCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTT---CSSEEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEE T ss_conf 778899988999987089834896357566641322799826999468854778889999999998504---99589995 Q ss_pred CCCCCCCCCCEE--CCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECCC------CCCC Q ss_conf 322677755000--21002235568524432023332102443333356655656765200110010245------6553 Q gi|254780295|r 94 LSIVDKQFHARF--SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI------HCQA 165 (247) Q Consensus 94 ~~~v~~~FhaR~--~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~~------~~~~ 165 (247) ...++.+--.+. ....+++.|.... | ...+++.+.++. ++ ...++.==.+. +... T Consensus 393 l~~~~~~~~~~ik~~~~~k~K~Yralv------------~-~~~~i~~~~l~~-l~---~l~~~~I~QrTP~RVlHRR~~ 455 (530) T 2v9k_A 393 LQLVTREAIGHMKEGEEEKTKTYSALI------------W-TNKAIQKKDIEF-LN---DIKDLKIDQKTPLRVLHRRPL 455 (530) T ss_dssp EEEECTHHHHHHHHHHHHCCEEEEEEE------------E-ESSCCCHHHHGG-GG---GCCSEEEEEECCGGGTTTSCC T ss_pred EEEECHHHHHHHHCCCCCCCEEEEEEE------------E-ECCCCCHHHHHH-HH---HCCCCEEEECCCCHHHHCCCC T ss_conf 289868997565235544445899999------------9-578789999999-87---257966870485053210577 Q ss_pred CCCCCCCCCCCCCCCC-CHHHHHHHHH Q ss_conf 3321103311112333-2001131588 Q gi|254780295|r 166 SSPIRTIDHFDVNSFG-NLIEIRVVAR 191 (247) Q Consensus 166 ~~~~R~I~~~~v~~~~-~~i~i~i~g~ 191 (247) ....|+|+++++.... ....+.|.++ T Consensus 456 ~~R~R~I~~~~~~~i~~~~f~l~l~tq 482 (530) T 2v9k_A 456 AVRARVIHFMETQYVDEHHFRLHLKTQ 482 (530) T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEEC T ss_pred CCEEEEEEEEEEEEECCCEEEEEEEEE T ss_conf 850569999998993396899999961 No 4 >2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1 Probab=34.29 E-value=23 Score=15.29 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=30.1 Q ss_pred EEEEEEECCCCCEEEEECC---CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 9999997166872004875---38778899999999970995699971121386 Q gi|254780295|r 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 (247) Q Consensus 4 ~~~~i~YdGt~y~G~q~Q~---~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G 54 (247) .-+.|+-||.+|.=--.-. ..--+-.+||++|.+-..+.+++.-+.|||+- T Consensus 8 i~i~I~~~Gq~~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIsA~~~~q 61 (96) T 2jvf_A 8 ITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQ 61 (96) T ss_dssp EEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHH T ss_pred EEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH T ss_conf 999984698288899998143899999999999998617644899999656678 No 5 >1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15 Probab=30.86 E-value=26 Score=14.95 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=32.7 Q ss_pred EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC Q ss_conf 999997166872004875387788999999999709956999711213861 Q gi|254780295|r 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 (247) Q Consensus 5 ~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GV 55 (247) ++.+=+|||-. -+..+|...++...+.++|.++...-.-++.+||+=..+ T Consensus 3 Li~~DlDGTLl-~~~~~~~~~~i~~~~~~al~~l~~~~~v~ivTGR~~~~~ 52 (239) T 1u02_A 3 LIFLDYDGTLV-PIIMNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEI 52 (239) T ss_dssp EEEEECBTTTB-CCCSCGGGCCCCHHHHHHHHHHHHHSEEEEECSSCHHHH T ss_pred EEEEECCCCCC-CCCCCHHHCCCCHHHHHHHHHHHCCCCEEEECCCCHHHH T ss_conf 99997476748-998896558899999999999841994999979987986 No 6 >1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1 Probab=29.69 E-value=27 Score=14.84 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=28.1 Q ss_pred EEEEEECCCCCEEEEEC---CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 99999716687200487---538778899999999970995699971121386 Q gi|254780295|r 5 CMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 (247) Q Consensus 5 ~~~i~YdGt~y~G~q~Q---~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G 54 (247) -+.|.-||.+|.=--.- ...--+-.+|+++|.+-..+.+++.-+.|||+- T Consensus 7 ~i~I~~~Gq~~d~~~~VsT~~ELqr~L~EL~~~i~r~GAr~V~IsIsA~~~~q 59 (106) T 1qys_A 7 QVNIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKE 59 (106) T ss_dssp EEEEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHH T ss_pred EEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH T ss_conf 99985798188899998054899999999999998717645899999666788 No 7 >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 Probab=26.03 E-value=22 Score=15.37 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=6.9 Q ss_pred CCCCCHHHHHHHH Q ss_conf 6899888999998 Q gi|254780295|r 210 DGKWTSTDLEKAL 222 (247) Q Consensus 210 ~g~~~~~~i~~~L 222 (247) .+..+.+++.+.+ T Consensus 308 h~~~p~~~l~~~~ 320 (436) T 1l5a_A 308 HGRYRIEQIEQDQ 320 (436) T ss_dssp TTTSCHHHHHHHT T ss_pred HCCCCHHHHHHHH T ss_conf 6689999999985 No 8 >2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP} Probab=23.28 E-value=36 Score=14.14 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHH Q ss_conf 88899999999999-999976899888999998 Q gi|254780295|r 191 RSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKAL 222 (247) Q Consensus 191 ~~FL~~mVR~mVG~-li~v~~g~~~~~~i~~~L 222 (247) -+|.+.|||+.+-. +.+-|...++++.+.++- T Consensus 17 P~FVR~k~r~~~E~~Are~G~~~IT~ev~~~Ak 49 (62) T 2l09_A 17 PFFARSQAKARIEQLARQAEQDIVTPELVEQAR 49 (62) T ss_dssp CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH T ss_conf 998899999999999999599976699999999 No 9 >2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1 Probab=19.46 E-value=31 Score=14.49 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=24.4 Q ss_pred CCCCCCCCHHHHHHHHHHH-HCCHHEEEECCCC Q ss_conf 2443333356655656765-2001100102456 Q gi|254780295|r 131 WLIPKSLDCENMRIAAQHL-VGRHDFTTFRSIH 162 (247) Q Consensus 131 ~~~~~~lD~~~l~~a~~~l-~G~HdF~~F~~~~ 162 (247) -.+....|.++++.|++.. .|+.||.-||+.- T Consensus 68 i~Va~~~n~~~i~~aik~~QaG~~~F~~F~~~~ 100 (149) T 2hh8_A 68 VSVKFSKDRHLIETTSNKLKSREITFQEYRRNL 100 (149) T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCCCHHHHHHHH T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 885376898999999999874997599999999 No 10 >3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* Probab=13.54 E-value=61 Score=12.79 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=31.8 Q ss_pred CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCE-EEEECCCC Q ss_conf 9229999997166872004875387788999999999709956-99971121 Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRT 51 (247) Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~-~~~~a~RT 51 (247) |.|..+.+=.|||-.. +..+|.....+|+.++....+ -+.++||. T Consensus 2 Mkk~l~~fDlDGTLl~------~~~~i~~~~~~ai~~l~~~g~~v~~~TGR~ 47 (246) T 3f9r_A 2 MKRVLLLFDVDGTLTP------PRLCQTDEMRALIKRARGAGFCVGTVGGSD 47 (246) T ss_dssp CCSEEEEECSBTTTBS------TTSCCCHHHHHHHHHHHHTTCEEEEECSSC T ss_pred CCEEEEEECCCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 9759999843378208------999889999999999996899999988999 Done!