Query         gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 247
No_of_seqs    126 out of 3058
Neff          7.3 
Searched_HMMs 23785
Date          Mon May 30 08:20:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780295.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1dj0_A Pseudouridine synthase  100.0       0       0  542.1  16.2  245    1-247     3-247 (264)
  2 1vs3_A TRNA pseudouridine synt 100.0       0       0  535.1  13.1  244    1-247     1-247 (249)
  3 2v9k_A Uncharacterized protein  72.3     4.9  0.0002   19.2   5.6  148   24-191   316-482 (530)
  4 2jvf_A De novo protein M7; tet  34.3      23 0.00095   15.3   2.9   51    4-54      8-61  (96)
  5 1u02_A Trehalose-6-phosphate p  30.9      26  0.0011   15.0   2.9   50    5-55      3-52  (239)
  6 1qys_A TOP7; alpha-beta, novel  29.7      27  0.0011   14.8   2.8   50    5-54      7-59  (106)
  7 1l5a_A Amide synthase, VIBH; n  26.0      22 0.00092   15.4   1.4   13  210-222   308-320 (436)
  8 2l09_A ASR4154 protein; proto-  23.3      36  0.0015   14.1   2.4   32  191-222    17-49  (62)
  9 2hh8_A Hypothetical protein YD  19.5      31  0.0013   14.5   1.1   32  131-162    68-100 (149)
 10 3f9r_A Phosphomannomutase; try  13.5      61  0.0026   12.8   3.3   45    1-51      2-47  (246)

No 1  
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00  E-value=0  Score=542.11  Aligned_cols=245  Identities=37%  Similarity=0.573  Sum_probs=239.6

Q ss_pred             CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf             92299999971668720048753877889999999997099569997112138612223468864063211046899999
Q gi|254780295|r    1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN   80 (247)
Q Consensus         1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN   80 (247)
                      |.||++.|+||||+|+|||+||+.+||||+||+||.+++++++.+.+|||||+||||++||+||+++...+.+.+...||
T Consensus         3 ~~r~~l~i~Y~Gt~y~G~Q~Q~~~~TVq~~Le~aL~~~~~~~i~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~ln   82 (264)
T 1dj0_A            3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVN   82 (264)
T ss_dssp             CEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCCCCHHHHHHHHH
T ss_pred             CEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             47999999997987216658889969999999999997399738998678857837050168988312114688988887


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC
Q ss_conf             86188876543443226777550002100223556852443202333210244333335665565676520011001024
Q gi|254780295|r   81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS  160 (247)
Q Consensus        81 ~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~  160 (247)
                      +.|  |+||+|+++.+|+++||||++|++|+|+|+++++..++++.+.+.|+...++|+++|++|++.|+|+|||++||+
T Consensus        83 ~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HdF~~F~~  160 (264)
T 1dj0_A           83 ANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA  160 (264)
T ss_dssp             HTS--CTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCC
T ss_pred             HCC--CCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             309--824788554205998660103787999987644756864440243356766788999999997768577575330


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf             56553332110331111233320011315888899999999999999976899888999998358821166636989847
Q gi|254780295|r  161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY  240 (247)
Q Consensus       161 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~  240 (247)
                      .+++.++++|++..+++.+.++++.|+|+|+||||||||+|||+|++||+|++++++|+++|+.+++...+++|||+||+
T Consensus       161 ~~~~~~~~~r~i~~~~~~~~~~~i~~~i~g~sFL~~qVR~mVg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~  240 (264)
T 1dj0_A          161 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY  240 (264)
T ss_dssp             TTCCCSCCEEEEEEEEEEEETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEE
T ss_pred             CCCCCCCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             56678887642057889973868999998337799999999999999987999999999998668866686645898767


Q ss_pred             EEEEEEC
Q ss_conf             6330439
Q gi|254780295|r  241 FDSVEYS  247 (247)
Q Consensus       241 L~~V~Y~  247 (247)
                      |++|+|.
T Consensus       241 L~~V~Y~  247 (264)
T 1dj0_A          241 LVAVDYP  247 (264)
T ss_dssp             EEEEECC
T ss_pred             ECCCCCC
T ss_conf             8543378


No 2  
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=535.13  Aligned_cols=244  Identities=34%  Similarity=0.504  Sum_probs=228.0

Q ss_pred             CCEEEEEEEECCCCCEEEEECCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             92299999971668720048753-87788999999999709956999711213861222346886406321104689999
Q gi|254780295|r    1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL   79 (247)
Q Consensus         1 M~r~~~~i~YdGt~y~G~q~Q~~-~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l   79 (247)
                      |.||++.|+||||+|+|||+||+ .+|||++||+||.++.++ +.+.+|||||+||||++|+++|+++.+++++.+..++
T Consensus         1 M~r~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~~~~-~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~l~~~l   79 (249)
T 1vs3_A            1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGAL-PKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL   79 (249)
T ss_dssp             CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGGTBC-SCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH
T ss_pred             CCEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
T ss_conf             937999999979981142057999989899999999982485-3256745666883375305012023456555611324


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf             98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r   80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR  159 (247)
Q Consensus        80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~  159 (247)
                      |+.|  |+||+|+++.+|+++||||++|++|+|+|++.++..++++.+++.|+++.+||+++|++|++.|+|+|||++||
T Consensus        80 N~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HdF~~F~  157 (249)
T 1vs3_A           80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA  157 (249)
T ss_dssp             HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC
T ss_pred             HHCC--CCCCEECCCEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf             4129--98647622124487405010067337898983467899678266531134556799999998607840547761


Q ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             45655333211033111123--3320011315888899999999999999976899888999998358821166636989
Q gi|254780295|r  160 SIHCQASSPIRTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE  237 (247)
Q Consensus       160 ~~~~~~~~~~R~I~~~~v~~--~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~  237 (247)
                      +.+++..+..+++..+.+..  .++.+.|+|+|+||||||||+|||+|+++|+|++++++|+++|++++|...+|+|||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~FL~~qVR~mvg~l~~vg~g~~~~~~i~~~l~~~~r~~~~~~APa~  237 (249)
T 1vs3_A          158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH  237 (249)
T ss_dssp             SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG
T ss_pred             CCCCCCCCCEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             88878996436789988874133222257885776899999999999999977999999999998668855586866997


Q ss_pred             CCEEEEEEEC
Q ss_conf             8476330439
Q gi|254780295|r  238 GLYFDSVEYS  247 (247)
Q Consensus       238 GL~L~~V~Y~  247 (247)
                      ||||++|+|.
T Consensus       238 GL~L~~V~Yp  247 (249)
T 1vs3_A          238 GLYFVEAAYP  247 (249)
T ss_dssp             GEEEEEEECC
T ss_pred             CCEECCCCCC
T ss_conf             7788943788


No 3  
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens}
Probab=72.27  E-value=4.9  Score=19.15  Aligned_cols=148  Identities=16%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCEEEEE--EEEEEECCC----C---CCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8778899999999970-995699971121386122234--688640632----1---10468999998618887654344
Q gi|254780295|r   24 GSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ--VAHFDLVRE----W---VPVILCKALNAYLKISDTISILN   93 (247)
Q Consensus        24 ~~TVq~~le~aL~~~~-~~~~~~~~a~RTD~GVhA~~q--v~~f~~~~~----~---~~~~~~~~lN~~L~~p~~Irv~~   93 (247)
                      ..|||+.|.+.+...+ +....+.+|||-|.-|--+|.  .+.+++..+    .   +...+...+|.-   .+.|.|.+
T Consensus       316 ~~SVee~I~~~i~~~f~~~~~~fh~sGREDiDVRmLG~GRPFv~Ei~nP~r~~~~~~~l~~l~~~iN~~---~~~V~v~~  392 (530)
T 2v9k_A          316 ESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNS---SNKIQVRD  392 (530)
T ss_dssp             SCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHHHHHHHHHHTT---CSSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEE
T ss_conf             778899988999987089834896357566641322799826999468854778889999999998504---99589995


Q ss_pred             CCCCCCCCCCEE--CCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECCC------CCCC
Q ss_conf             322677755000--21002235568524432023332102443333356655656765200110010245------6553
Q gi|254780295|r   94 LSIVDKQFHARF--SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI------HCQA  165 (247)
Q Consensus        94 ~~~v~~~FhaR~--~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~~------~~~~  165 (247)
                      ...++.+--.+.  ....+++.|....            | ...+++.+.++. ++   ...++.==.+.      +...
T Consensus       393 l~~~~~~~~~~ik~~~~~k~K~Yralv------------~-~~~~i~~~~l~~-l~---~l~~~~I~QrTP~RVlHRR~~  455 (530)
T 2v9k_A          393 LQLVTREAIGHMKEGEEEKTKTYSALI------------W-TNKAIQKKDIEF-LN---DIKDLKIDQKTPLRVLHRRPL  455 (530)
T ss_dssp             EEEECTHHHHHHHHHHHHCCEEEEEEE------------E-ESSCCCHHHHGG-GG---GCCSEEEEEECCGGGTTTSCC
T ss_pred             EEEECHHHHHHHHCCCCCCCEEEEEEE------------E-ECCCCCHHHHHH-HH---HCCCCEEEECCCCHHHHCCCC
T ss_conf             289868997565235544445899999------------9-578789999999-87---257966870485053210577


Q ss_pred             CCCCCCCCCCCCCCCC-CHHHHHHHHH
Q ss_conf             3321103311112333-2001131588
Q gi|254780295|r  166 SSPIRTIDHFDVNSFG-NLIEIRVVAR  191 (247)
Q Consensus       166 ~~~~R~I~~~~v~~~~-~~i~i~i~g~  191 (247)
                      ....|+|+++++.... ....+.|.++
T Consensus       456 ~~R~R~I~~~~~~~i~~~~f~l~l~tq  482 (530)
T 2v9k_A          456 AVRARVIHFMETQYVDEHHFRLHLKTQ  482 (530)
T ss_dssp             CEEEEEEEEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEEECCCEEEEEEEEE
T ss_conf             850569999998993396899999961


No 4  
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=34.29  E-value=23  Score=15.29  Aligned_cols=51  Identities=16%  Similarity=0.040  Sum_probs=30.1

Q ss_pred             EEEEEEECCCCCEEEEECC---CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             9999997166872004875---38778899999999970995699971121386
Q gi|254780295|r    4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG   54 (247)
Q Consensus         4 ~~~~i~YdGt~y~G~q~Q~---~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G   54 (247)
                      .-+.|+-||.+|.=--.-.   ..--+-.+||++|.+-..+.+++.-+.|||+-
T Consensus         8 i~i~I~~~Gq~~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIsA~~~~q   61 (96)
T 2jvf_A            8 ITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQ   61 (96)
T ss_dssp             EEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHH
T ss_pred             EEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf             999984698288899998143899999999999998617644899999656678


No 5  
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=30.86  E-value=26  Score=14.95  Aligned_cols=50  Identities=12%  Similarity=0.128  Sum_probs=32.7

Q ss_pred             EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             999997166872004875387788999999999709956999711213861
Q gi|254780295|r    5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV   55 (247)
Q Consensus         5 ~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GV   55 (247)
                      ++.+=+|||-. -+..+|...++...+.++|.++...-.-++.+||+=..+
T Consensus         3 Li~~DlDGTLl-~~~~~~~~~~i~~~~~~al~~l~~~~~v~ivTGR~~~~~   52 (239)
T 1u02_A            3 LIFLDYDGTLV-PIIMNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEI   52 (239)
T ss_dssp             EEEEECBTTTB-CCCSCGGGCCCCHHHHHHHHHHHHHSEEEEECSSCHHHH
T ss_pred             EEEEECCCCCC-CCCCCHHHCCCCHHHHHHHHHHHCCCCEEEECCCCHHHH
T ss_conf             99997476748-998896558899999999999841994999979987986


No 6  
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=29.69  E-value=27  Score=14.84  Aligned_cols=50  Identities=14%  Similarity=0.017  Sum_probs=28.1

Q ss_pred             EEEEEECCCCCEEEEEC---CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             99999716687200487---538778899999999970995699971121386
Q gi|254780295|r    5 CMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG   54 (247)
Q Consensus         5 ~~~i~YdGt~y~G~q~Q---~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G   54 (247)
                      -+.|.-||.+|.=--.-   ...--+-.+|+++|.+-..+.+++.-+.|||+-
T Consensus         7 ~i~I~~~Gq~~d~~~~VsT~~ELqr~L~EL~~~i~r~GAr~V~IsIsA~~~~q   59 (106)
T 1qys_A            7 QVNIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKE   59 (106)
T ss_dssp             EEEEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHH
T ss_pred             EEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf             99985798188899998054899999999999998717645899999666788


No 7  
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=26.03  E-value=22  Score=15.37  Aligned_cols=13  Identities=15%  Similarity=0.478  Sum_probs=6.9

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             6899888999998
Q gi|254780295|r  210 DGKWTSTDLEKAL  222 (247)
Q Consensus       210 ~g~~~~~~i~~~L  222 (247)
                      .+..+.+++.+.+
T Consensus       308 h~~~p~~~l~~~~  320 (436)
T 1l5a_A          308 HGRYRIEQIEQDQ  320 (436)
T ss_dssp             TTTSCHHHHHHHT
T ss_pred             HCCCCHHHHHHHH
T ss_conf             6689999999985


No 8  
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=23.28  E-value=36  Score=14.14  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHH
Q ss_conf             88899999999999-999976899888999998
Q gi|254780295|r  191 RSFLHTQIRSFVGS-LKLVGDGKWTSTDLEKAL  222 (247)
Q Consensus       191 ~~FL~~mVR~mVG~-li~v~~g~~~~~~i~~~L  222 (247)
                      -+|.+.|||+.+-. +.+-|...++++.+.++-
T Consensus        17 P~FVR~k~r~~~E~~Are~G~~~IT~ev~~~Ak   49 (62)
T 2l09_A           17 PFFARSQAKARIEQLARQAEQDIVTPELVEQAR   49 (62)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHH
T ss_conf             998899999999999999599976699999999


No 9  
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=19.46  E-value=31  Score=14.49  Aligned_cols=32  Identities=16%  Similarity=0.125  Sum_probs=24.4

Q ss_pred             CCCCCCCCHHHHHHHHHHH-HCCHHEEEECCCC
Q ss_conf             2443333356655656765-2001100102456
Q gi|254780295|r  131 WLIPKSLDCENMRIAAQHL-VGRHDFTTFRSIH  162 (247)
Q Consensus       131 ~~~~~~lD~~~l~~a~~~l-~G~HdF~~F~~~~  162 (247)
                      -.+....|.++++.|++.. .|+.||.-||+.-
T Consensus        68 i~Va~~~n~~~i~~aik~~QaG~~~F~~F~~~~  100 (149)
T 2hh8_A           68 VSVKFSKDRHLIETTSNKLKSREITFQEYRRNL  100 (149)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             885376898999999999874997599999999


No 10 
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=13.54  E-value=61  Score=12.79  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCE-EEEECCCC
Q ss_conf             9229999997166872004875387788999999999709956-99971121
Q gi|254780295|r    1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRT   51 (247)
Q Consensus         1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~-~~~~a~RT   51 (247)
                      |.|..+.+=.|||-..      +..+|.....+|+.++....+ -+.++||.
T Consensus         2 Mkk~l~~fDlDGTLl~------~~~~i~~~~~~ai~~l~~~g~~v~~~TGR~   47 (246)
T 3f9r_A            2 MKRVLLLFDVDGTLTP------PRLCQTDEMRALIKRARGAGFCVGTVGGSD   47 (246)
T ss_dssp             CCSEEEEECSBTTTBS------TTSCCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEEECCCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9759999843378208------999889999999999996899999988999


Done!